FMO03532.5prime Sequence
1239 bp (1077 high quality bases) assembled on 2008-07-14
> FMO03532.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGACAGTTGTTTGGGT
CATTCTGGCACTAAGCTGCCTGAGCTTGTCAGCTGGACTGCAGAGAACCA
ATAAATACGAAGGTTATAAAATCTATGAGGTCTCTAGTGAAGCGCGTTCT
GTAGCCTTTTCAGAAGCTCTGTCCGAACTGGTCAAGAATGCGTCATATTA
TGAGGTGTTCTCGGAATTGAATGCTGGTAATCCAGGCAAGATTATGGTGC
ATCCTCACGAACAGGTGAACTTTGTGCAGCTGATGGAGGAGAATAATGTG
AAGTATGATATTATCAACCGAAATGTGGGTCTTACTCTGAGCCGTCAATT
CGAAACGAACCGGATGTTACGACATTGGTTTCCCTACAATGGAAGATTGG
GCACTGAGAGATACTACAACCATGAGGAGATCAACCAGTTCATTGAGGAT
TTGGCTGGGGAACATCCGCGTAGGGTTTTCCTAAAAACCGTAGGCAGAAG
TTACGAAGGTCGCTGGCTGAAAACCATCACAATCACCAATGGCGATGCCA
GGCGCAATAAGAATGTGATCCTCGTAGATGGTGGCTTCCATGCACGAGAA
TGGATCTCACCGGCAGCTGCTACTTATCTGATTAACCAGCTGGTGTATAA
TCTCGAAGATAATGCGGATCTTCTGCTGGACTTCGATTGGGTGATCCTCC
CTGTGGTCAATCCCGATGGCTATGAGTACACCCAGTTATCGGAGGATACT
CGCATGTGGCGCAAAACCAGGAAACCCAGCAGTTCGGATTGCATTGGCAC
CGATCCCAACCGTAACTTTGACTTCCACTGGAACGAGGAGGGTGCCTCGG
ATGATCCCTGTGATAACATATATGCTGGTGCAAAGCCTTTTTCAGAACCA
GAGGCTCTGGTCGTTGGGGATCTCATCCATAGCTATGTGACCGCGGACAG
ATGTATTTGACTTTGCATTCGTATGGATCACTTATTCTGTATCCTTGGGG
TTGGACGCAGCTGTTCCCGACACAGAAGAGATCTTGCATGAGTTGCTGCA
GCAGGTCAAAGTGCCATTCAGAGCCACTGCACTATCTAATAAGATGACCT
TCTGCACCATCATTAATTATGCGGCATCGGGAAGCTAGCCAATGAATATA
TGGCTTCAATGCTGCTTCCATATCATACCAATGCTACTTGCCTCGGTGTA
CAGGGATTCAGAATCTCTCTCGGGATCTCTGGAATGATC
FMO03532.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18417-RA | 1480 | CG18417-RA | 26..1175 | 34..1176 | 5235 | 97.8 | Plus |
| CG8562-RA | 1483 | CG8562-RA | 495..746 | 517..768 | 335 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7400229..7401124 | 113..1007 | 4430 | 99.9 | Plus |
| 3L | 28110227 | 3L | 7400095..7400182 | 34..121 | 425 | 98.9 | Plus |
| 3L | 28110227 | 3L | 7398864..7399082 | 517..735 | 300 | 75.8 | Plus |
| 3L | 28110227 | 3L | 7401194..7401257 | 1009..1071 | 210 | 92.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:48 has no hits.
FMO03532.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:45 Download gff for
FMO03532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18417-RA | 19..1140 | 34..1149 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:23 Download gff for
FMO03532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18417-RA | 26..1147 | 34..1149 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:58 Download gff for
FMO03532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18417-RA | 26..1147 | 34..1149 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:58 Download gff for
FMO03532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7400095..7400174 | 34..113 | 100 | -> | Plus |
| 3L | 7400230..7401126 | 114..1008 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:23 Download gff for
FMO03532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7393195..7393274 | 34..113 | 100 | -> | Plus |
| arm_3L | 7393330..7394226 | 114..1008 | 99 | -> | Plus |
