FMO03533.5prime Sequence
931 bp (931 high quality bases) assembled on 2008-07-14
> FMO03533.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGTCCGGCAAGGACGATC
GATCCAAGGAAAAGCGCAGGAACATGAAGCAGTACAATCATCACCATAAA
AAGGATCAAGGGCGCTCCACCACATCGTCGGGATCGCCACCACCCACCTC
CCGTCGCAGCATGGTTGATGTGGCGGACTCGAGCGATGAGCCAAGGTTGG
CCAGGCGTGGCAATTGGCAGTCCAGTGGAGCAGGCCGCTCATCGTTGGCA
CCGCAACGGAACAGGGACATGCTGGACACCCTGCCCAGCGACACCGACGA
TGTGGAGCAATTGGGCCTGGATGGTGCACCCATCGATGAGAATGCCCGTG
CCCAGTTACGAGCTGGCGATTTCCAGCAGCTGGCCCAGTTTCCCAGCCTC
GGTGGCGGCCACTTCACCTTTGGGTCAGAGCGCGAATGGGCCAACGTGGC
CGAGGGCCAGACCAAGCTACACACCAAGGCTGCCAGTGCTTACTTCACCC
TGAACCTCACCCGCCTAAATGTGGGTCTGCAAACGATTCCGTTATACAAG
CGTATGGATTATCCGGCGTCTTTGTTCACCCGCGCTCAGATTGCCGCCCA
AGAGAAGGCCGCCGAACGGGCTGAGGCAGTTTACCAGCAGTGCATTCTGA
AGGACGCCAATGGGGGCGCCAAGTCGCGAGCTCCCTCTGCTAAGTCCAAT
AAGGACGTTGCCCCTGCAGCGGCGGAAAAACCAATTGCTGCCTCAGCAGC
TGAACCTGATGAACTTGACGAGCTATTGGCCATGACCGATACGCAACTGG
ATATAGGCTCTGGAACCATTACGATGCCAATGCCTATGGTGCAGCCGGCC
ACACCCTCATCGGCAGCAAGCAAAAACGGTGTGGAGGAATGGCTGGATTC
CGTTTTGGATGAAGCAAGCTTTCTAGACCAT
FMO03533.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aven-RB | 1207 | CG15727-RB | 138..1019 | 32..913 | 4410 | 100 | Plus |
| Aven-RA | 1165 | CG15727-RA | 96..977 | 32..913 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12628558..12629410 | 913..61 | 4265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:00:58 has no hits.
FMO03533.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:33 Download gff for
FMO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15727-RA | 89..982 | 24..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:45 Download gff for
FMO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aven-RA | 89..982 | 24..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:15 Download gff for
FMO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aven-RA | 89..982 | 24..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:15 Download gff for
FMO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12628553..12629410 | 61..921 | 99 | <- | Minus |
| X | 12629475..12629510 | 24..60 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:45 Download gff for
FMO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12522586..12523443 | 61..921 | 99 | <- | Minus |
| arm_X | 12523508..12523543 | 24..60 | 91 | | Minus |
