FMO03534.5prime Sequence
1241 bp (1071 high quality bases) assembled on 2008-07-14
> FMO03534.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAGTACAGCCAAGT
GGGAGAACAACGAGGAGATTAAGATCTTTCGCGAATATCTTCGCATACCA
ACGGTGCATCCAAATGTGGATTACACCGTTTGCACGGAATTCTTGAAACG
CCAGGCTGCCAGCTTGGACCTGCCCGTGGAGGTTATCTATCCGGTGAACG
AGCAGAATCCCGTGGTGGTGCTAAAATGGCAGGGTTCCCAGCCGGAACTG
CCCTCCATCATTCTCAATTCGCACACGGATGTAGTGCCCGTTTTTGAGGA
GAAGTGGACACACGGTCCATTCAGCGCGGATCTAGATGCAGAGGGTCGCA
TCTTTGCGCGCGGATCGCAGGACATGAAGTGCGTGGGCACCCAATATCTG
GGAGCTGTGCGTGCCCTCAAGGCCAGTGGCTATCAACCCAAGAGGACGAT
CTATCTCACTTATGTTCCGGACGAGGAGGTTGGCGGCCACCTGGGCATGC
GGGAGCTGGTAAAGAGCGACTACTTCAAGAAGCTCAATGTGGGATTCAGT
TTCGACGAGGGAATCTCTAGTGCGGATGAAACCTACGCTCTGTACTACGC
TGAACGGACTCTTTGGCATCTTCGTTTCAAGATCAGCGGAACTGCTGGTC
ACGGATCACTGTTGCTCCCGAATACTGCTGGCGAGAAGCTGAACTATGTG
GTAGGCAAAATGATGGAGTTCCGCAAATCGCAAGTGCAAAAACTAGCTGA
CGACTCATCCCTCGAAATTGGTGATGTGACCACTGTGAATCTCACCCAAC
TGAGGGGCGGAGTCCAGAGCAACGTGGGTTCCCCCATTGCTGGAAGCTGT
ATTTGATATCCGCATTGCCGTCACCGTGGATATCCCTGCCTTTGAGAAGC
AGATTCGCGACTGGTGCGAGGAGGCTGGCGGCGGCATTGAACTGGAGTTT
GAGATGAAAACCCCTTTGTGGGAGCCAACAAAGATTGACTCGTCGAATGC
CTACTGGCTGGCCTTTAAGAAGCACTCGATGACCTTGGCCTCAAGACACG
GGTTCGTGTTTCCCGCGCCACGGACAGTCGTATATTCGCCTACGCAGCAT
CGAGTCTAGGATCCCGCCCAATAAACACCCTCCATCTTGCTGAAGAACAC
AGATTAATTCTGAGCCGAATCCTTATATGGCACGCATTGGAGGGTTTACA
AGAAGACTCATTTCTCTGCGCCGTTACACTGGAATGCTGCT
FMO03534.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17110-RC | 2911 | CG17110-RC | 42..1226 | 35..1212 | 5180 | 96.9 | Plus |
| CG6726-RC | 2911 | CG6726-RC | 42..1226 | 35..1212 | 5180 | 96.9 | Plus |
| CG6726-RA | 1473 | CG6726-RA | 95..1279 | 35..1212 | 5180 | 96.9 | Plus |
| CG17110-RC | 2911 | CG17110-RC | 1899..2460 | 355..917 | 395 | 72.1 | Plus |
| CG6726-RC | 2911 | CG6726-RC | 1899..2460 | 355..917 | 395 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23092056..23092547 | 126..617 | 2460 | 100 | Plus |
| 3R | 32079331 | 3R | 23092601..23093018 | 618..1035 | 1920 | 98.3 | Plus |
| 3R | 32079331 | 3R | 23091871..23091961 | 35..125 | 455 | 100 | Plus |
| 3R | 32079331 | 3R | 23098473..23098780 | 633..941 | 400 | 76.1 | Plus |
| 3R | 32079331 | 3R | 23095893..23096315 | 136..561 | 385 | 73.2 | Plus |
| 3R | 32079331 | 3R | 23098035..23098330 | 254..549 | 325 | 74 | Plus |
| 3R | 32079331 | 3R | 10676275..10676370 | 720..625 | 240 | 83.3 | Minus |
| 3R | 32079331 | 3R | 23095745..23095823 | 47..125 | 230 | 86.1 | Plus |
| 3R | 32079331 | 3R | 23094059..23094283 | 355..579 | 225 | 73.3 | Plus |
| 3R | 32079331 | 3R | 23099842..23100080 | 249..487 | 205 | 72.4 | Plus |
| 3R | 32079331 | 3R | 23097771..23097841 | 47..117 | 190 | 84.5 | Plus |
| 3R | 32079331 | 3R | 23100419..23100585 | 773..940 | 190 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:52 has no hits.
FMO03534.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:06 Download gff for
FMO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6726-RA | 81..1144 | 23..1081 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:05 Download gff for
FMO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6726-RB | 34..1091 | 28..1081 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:44 Download gff for
FMO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6726-RA | 81..1144 | 23..1081 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:44 Download gff for
FMO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23091857..23091961 | 23..125 | 95 | -> | Plus |
| 3R | 23092056..23092547 | 126..617 | 100 | -> | Plus |
| 3R | 23092601..23093018 | 618..1035 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:05 Download gff for
FMO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18917579..18917683 | 23..125 | 95 | -> | Plus |
| arm_3R | 18917778..18918269 | 126..617 | 100 | -> | Plus |
| arm_3R | 18918323..18918740 | 618..1035 | 99 | -> | Plus |
