FMO03536.5prime Sequence
1096 bp (1009 high quality bases) assembled on 2008-07-14
> FMO03536.5prime
TATAGCATAAAAGCGAAGTTATCAGTCGACATGGTTTGCGCTTTGGGAAA
GAAGGAAGTGCCAATAAAATTGGCATTGGCATAATTCGAGATGGTAAAGT
ACTGGCGAACGTACGTAGAACGTACATTACCCCACCAGGAGAAGGTTTCC
TGCCCAAGGAAACGGCCAAACATCACAGGGAAGCCATCCTGGGCTTGGTG
GAATCCAGTCTAAAGGAAGCCCAATTGAAATCCTCTGATCTAGATGTTAT
TTGTTACACAAAAGGCCCAGGAATGGCTCCTCCTTTGCTGGTTGGCGCCA
TTGTGGCTCGCACTTTGTCGCTCTTGTGGAATATCCCGCTGCTGGGCGTA
AATTACTGCATTGGACACATCGAGATGGGTCGCCTGATCACCGGTGCCCA
GAATCCTACAGTTCTCTATGTGAGCGGTGGAAACACACAGGTTATTGCCT
ACTCCAATAAGCGATATCGCATCTTTGGCGAAACTATAGACATTGCAGTG
GGCAATTGCCTGGATCGATTCGCCCGCATCATTAAGCTGTCCAACGATCC
TAGTCCGGGCTACAACATCGAGCAGCTGGCCAAGTCGAGCAATCGTTATA
TTAAACTGCCCTATGTGGTTAAGGGCATGGATGTCAGCTTCTCGGGGATT
TTATCCTACATCGAGGACCTGGCAGAGCCGGGCAAGAGGCAAAATAAGAG
AAAAAAAGCCACAGGAAGAAGAGGTCAATAATTACAGCCAAGCCGATCTT
TGCTATTCGCTGCAGGAGACCATCTTCGCCATGTTGGTGGAGATCACAGA
GCGCGCCATGGCACACTGCGGCTCAAATGAGGTCTTATAGTTGGAGGTGT
GGGTTGCAATGAGCGACTCCAGGAGATGATGCGTATTATGTGCGAGGAAC
GCGGAGGCAAACTCTTTGCCACTGATGAACGTTACTGCAAGACAACGGAC
TAATGATTGCCCATGCTGGTGCAGAAATGTTCCGCTCTGGCACTAAGATG
CCCTTTGAGAATCTTATGTGACTCACGAATTTCGAACGGACGAATTGCTG
GTCAAGCTGGCGGAAGACCGCAAGCTTTCAAGACCATTCGTTTGGC
FMO03536.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4933-RA | 1180 | CG4933-RA | 62..1098 | 29..1063 | 4910 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16352228..16352917 | 143..833 | 3390 | 99.7 | Plus |
| 3L | 28110227 | 3L | 16352974..16353196 | 834..1054 | 940 | 96.9 | Plus |
| 3L | 28110227 | 3L | 16352052..16352170 | 29..146 | 500 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:10:58 has no hits.
FMO03536.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:58 Download gff for
FMO03536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4933-RA | 13..1055 | 29..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:21 Download gff for
FMO03536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4933-RA | 62..1104 | 29..1068 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:13 Download gff for
FMO03536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4933-RA | 62..1104 | 29..1068 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:13 Download gff for
FMO03536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16352052..16352168 | 29..144 | 96 | -> | Plus |
| 3L | 16352230..16352915 | 145..831 | 99 | -> | Plus |
| 3L | 16352971..16353210 | 832..1068 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:21 Download gff for
FMO03536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16345152..16345268 | 29..144 | 96 | -> | Plus |
| arm_3L | 16345330..16346015 | 145..831 | 99 | -> | Plus |
| arm_3L | 16346071..16346310 | 832..1068 | 95 | | Plus |
