FMO03537.5prime Sequence
625 bp (625 high quality bases) assembled on 2008-07-14
> FMO03537.5prime
CATACATTATACGAAGTTATCAGTCGACATGTCTGCCGAGGCGAATCCCG
AGATGGATAAGGAGCACCACGAGTCCCCATTCGCAGCGAACCGCAAGGCC
GGTGCCAGCGGCGCCGGCAAACAGGACTCGAACTGCCGCACCTGCAACGA
TTTCAAGTCGTGGTCCAAGCAGCAACGCCTCATCTCCAACGTGCAGAGCG
CCAAGGTGAAGCACATGGCCGCCGCCGAAAAGCTGACCGTCAACGCCGCC
GAAGATCCGCTGCCCCGCGACGACTGCCCGCTGGACAAGGTGAGGCTGGG
AATTTCCACCTGGGGACTGCTCCACACCATGGCCGCCTTTTACTCGGACA
ACCCCACGGACACCGAGAAGCGCGACATGAAGACCTTTTTTGAGGTTCTG
TCGCGCCTTTACCCCTGCGAGTTTTGCGCCAAGGACTTTCGCACCGACCT
GGACGTCAACCCCATCAATGTGAACTCCCAAAAGGAGCTAGCACTGTGGC
TGTGCAAGTTCCACAACCGAGTGAACGACAAACTGGGCAAACCGCTCTTC
GATTGCACCAAGGTGAACGAGAGGTGGCGCGACGGCTGGCTAGACGGCTC
CTGCGACGCAAGCTTTCTAGACCAT
FMO03537.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Alr-RB | 1362 | CG12534-RB | 464..1043 | 28..607 | 2900 | 100 | Plus |
| Alr-RA | 1107 | CG12534-RA | 209..788 | 28..607 | 2900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19749386..19749629 | 204..447 | 1220 | 100 | Plus |
| X | 23542271 | X | 19749131..19749312 | 28..209 | 910 | 100 | Plus |
| X | 23542271 | X | 19749689..19749848 | 448..607 | 800 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:14:45 has no hits.
FMO03537.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:37 Download gff for
FMO03537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12534-RA | 209..797 | 20..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:33 Download gff for
FMO03537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alr-RA | 205..793 | 20..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:00 Download gff for
FMO03537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Alr-RA | 205..793 | 20..613 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:00 Download gff for
FMO03537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19749126..19749308 | 23..205 | 98 | -> | Plus |
| X | 19749388..19749629 | 206..447 | 100 | -> | Plus |
| X | 19749689..19749853 | 448..613 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:33 Download gff for
FMO03537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19643159..19643341 | 23..205 | 98 | -> | Plus |
| arm_X | 19643421..19643662 | 206..447 | 100 | -> | Plus |
| arm_X | 19643722..19643886 | 448..613 | 98 | | Plus |
