FMO03538.5prime Sequence
812 bp (812 high quality bases) assembled on 2008-07-14
> FMO03538.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGAGAACCCTGAGC
GTCTTGATTCTCCTCGCCACTCTGGTTGCCTTTTGTGCAGCCCAGCAGGC
CTCCAACGGCAAGAACAGAAAGGAAAATGCCTTCTCCAAGATCGTTCCTC
GCCTGCTGTGGAACATCAAGCGCGGCGACCAGGAGAGCCACCGCAACTCC
CAGCAGCCCATCATCATAGTGCAGCAGCCCAGCTCGAATCAGGAATCGGA
TAGACACCACCACCACAACCCCAACTATCCCTACTACCCGTACTACCCAC
CACCACCACCTCAAAACCGTCCTCCGCCACCGTTTCCCGGCATGGACTGG
AACACTGTGGGAGGAGGCCCCACCTACCTGATCATCAACCCCAACAACAT
GCAGGGCATCTACCTGCCCGCCAGCTCTAACAGCTCCAACTCCACTAGCT
CACGGCGCAGCGCCTTCGTGCCCACCATTTCCGATTTGCTGCAGGGCCTC
AACCTGGACGACCTGGCCGATGGAAGTCTCTTCGAGGATGATTCCGAGGT
GGTCAACGCGGCCGAGGATGGAAATGCGGAGATTCCCCTGGCCGATGGAC
CAATCAGCCAGGCTGACGATGATCGCGAGGAGGACGTGATCAGCGAGGAC
GAGATCGATGCCATGGATCGCCAGAGCAACAGGGGATTGAGTCCCAAGCA
TCTGGTCTCCATACTGATGCAGGACAAGCGACGTCGCCGCATCCAGGAGG
TTCTCGCTGGCATCTATCTGAGGAACTACAATCTGAACAGAAAGGCAAGC
TTTCTAGACCAT
FMO03538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13983-RA | 877 | CG13983-RA | 37..796 | 35..794 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6263638..6264303 | 794..129 | 3330 | 100 | Minus |
| 2L | 23513712 | 2L | 6264360..6264454 | 129..35 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:39:22 has no hits.
FMO03538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:38 Download gff for
FMO03538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 29..796 | 28..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:44 Download gff for
FMO03538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 32..799 | 28..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:30 Download gff for
FMO03538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13983-RA | 32..799 | 28..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:30 Download gff for
FMO03538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6263635..6264302 | 130..798 | 99 | <- | Minus |
| 2L | 6264360..6264459 | 28..129 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:44 Download gff for
FMO03538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6263635..6264302 | 130..798 | 99 | <- | Minus |
| arm_2L | 6264360..6264459 | 28..129 | 96 | | Minus |
