FMO03539.5prime Sequence
479 bp (479 high quality bases) assembled on 2008-07-14
> FMO03539.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGTATATGCTC
CCTCATTTGCACAATGGCTGGCAGGTGGACCAGGCCATTCTCTCCGAGGA
GGACCGAGTAGTTGTAATACGTTTCGGTCACGATTGGGACCCCGCCTGCA
TGAAAATGGATGAGGTCATGTACAGCATCGCCGAGAAGGTGAAGAACTTT
GCTGTCATCTATTTGGTGGACATTACCGAGGTGCCGGACTTCAACAAGAT
GTACGAGTTGTACGATCCTTGCACGGTGATGTTCTTCTTCCGCAACAAGC
ACATCATGATCGATTTGGGCACGGGCAACAACAACAAGATCAACTGGCCA
CTGGAGGACAAGCAGGAGATGATCGACATTGTGGAAACGGTGTATCGAGG
TGCCCGTAAGGGCCGTGGTCTGGTAGTCTCGCCCAAGGACTACTCTACCA
AGTACAGATACGCAAGCTTTCTAGACCAT
FMO03539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dim1-RA | 606 | CG3058-RA | 87..512 | 36..461 | 2130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4403514..4403861 | 114..461 | 1740 | 100 | Plus |
| 2L | 23513712 | 2L | 4403337..4403416 | 36..115 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:02:12 has no hits.
FMO03539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:10 Download gff for
FMO03539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dim1-RA | 79..512 | 28..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:45 Download gff for
FMO03539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dim1-RA | 83..516 | 28..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:30 Download gff for
FMO03539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dim1-RA | 83..516 | 28..466 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:30 Download gff for
FMO03539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4403336..4403414 | 35..113 | 98 | -> | Plus |
| 2L | 4403514..4403865 | 114..466 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:45 Download gff for
FMO03539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4403336..4403414 | 35..113 | 98 | -> | Plus |
| arm_2L | 4403514..4403865 | 114..466 | 99 | | Plus |
