FMO03540.5prime Sequence
498 bp (498 high quality bases) assembled on 2008-07-14
> FMO03540.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCTCGTTACTTTAA
AGAACAGGACATTGATGAGTTCCGTGAGTGTTTTTATCTGTTCGCCCGTT
CGGGCCAAATCAACAATTTGGACGAACTAACCGTTATTATGCGTTCTTTG
GGTCTTTCGCCGACGATCCAAGAACTGGTTTCCTATCTGAAGCAAAAGAA
TGGGAAAATGAGCTTCGCCGACTTCCTGGACATCATGCATCAGCACTCCA
AGGTGGAGAGTTTGCCGGACGAGGTCATTGCCGCCTTTAAAGCGGCCGAT
CCGCAGAATAAGGGCACCATCTCGGCTAGACAGCTGCGTAATCTACTTCA
AAACTGGGGAGAGGGCCTGTCCATGCGCGAAGTGGACAACATCTTCCGGG
AGGCCAATGTGAACAACAATAGCACTGTGCGGTATGCAGACTTTGTCAAG
ATTGCATGCGCCCCAGTTCCCGACTACTATGCAAGCTTTCTAGACCAT
FMO03540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17272-RA | 670 | CG17272-RA | 145..591 | 34..480 | 2220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20823392..20823739 | 480..133 | 1725 | 99.7 | Minus |
| 3R | 32079331 | 3R | 20823801..20823868 | 134..67 | 340 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:14:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gtwin | 7411 | gtwin GTWIN 7411bp | 1664..1731 | 433..365 | 117 | 65.2 | Minus |
FMO03540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:40 Download gff for
FMO03540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17272-RA | 135..581 | 34..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:35 Download gff for
FMO03540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17272-RA | 145..591 | 34..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:03 Download gff for
FMO03540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17272-RA | 145..591 | 34..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:03 Download gff for
FMO03540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20823392..20823739 | 133..480 | 99 | <- | Minus |
| 3R | 20823803..20823867 | 68..132 | 100 | <- | Minus |
| 3R | 20823935..20823968 | 33..67 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:35 Download gff for
FMO03540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16649114..16649461 | 133..480 | 99 | <- | Minus |
| arm_3R | 16649525..16649589 | 68..132 | 100 | <- | Minus |
| arm_3R | 16649657..16649690 | 33..67 | 97 | | Minus |
