FMO03541.5prime Sequence
640 bp (289 high quality bases) assembled on 2008-07-14
> FMO03541.5prime
TCGTATAGCATACATTATACGAAGTTATCAATCCACATGCTAATCGCCTG
GTTAGTGCTTGCCGCCACTTTGAGCCGATCCATCATAGCCAGCACCACGA
TATCGATACCGATCACGACGCAGGACATATTACCGGGTGACGTGTTTTTT
GAAATCCTGTCCCCCTCGGAACTGGAATACACGGACCGGCTGCGCCCGGC
CAAGGACTTTGGATCCGCCTTCTCGGAGCGACTGGAGGGTGTGCCGCTAG
TGATTACAGATCCCCCCGGCGCCTGCCAGGAGATCCGGAACGCCAGAGAT
CTGAATGGGGGCGTCGCACTCATTGATCGAGGGGAGTGTTCCTTCCTCAC
GAGACACTTCGAGCGGAGGCAGCTGGCGCATTGGCTGCAATCATCACTGA
GTACAATCCCCCCTCTCCAGAGTTAGAGCACTACCTCGAGATGATACATG
ACAACTCCCAACAGGACGCCAACATACCGGCCGGCTTTCTTCTCGGGAAG
AAGGGCGTCATCATCCAGTCGACGCTGCATCGGCTGAATACGGTGCACGC
CCTGATCAGATACCGGACAACCTCACCTTTACCCCGCCATCTAAGATTAA
TCATCCGCCGTGGCTGGGCTGGGCAAGCTTTCTAGACCAT
FMO03541.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9849-RB | 920 | CG9849-RB | 89..676 | 37..622 | 2650 | 96.9 | Plus |
| CG9849-RA | 986 | CG9849-RA | 155..742 | 37..622 | 2650 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22937864..22938160 | 37..333 | 1410 | 98.3 | Plus |
| 2R | 25286936 | 2R | 22938489..22938781 | 332..622 | 1200 | 95.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:21:04 has no hits.
FMO03541.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:46 Download gff for
FMO03541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9849-RA | 151..742 | 29..622 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:29 Download gff for
FMO03541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9849-RA | 151..742 | 29..622 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:07 Download gff for
FMO03541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9849-RA | 151..742 | 29..622 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:07 Download gff for
FMO03541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22937860..22938159 | 29..332 | 97 | -> | Plus |
| 2R | 22938490..22938781 | 333..622 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:29 Download gff for
FMO03541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18825383..18825682 | 29..332 | 97 | -> | Plus |
| arm_2R | 18826013..18826304 | 333..622 | 95 | | Plus |
