FMO03542.5prime Sequence
893 bp (893 high quality bases) assembled on 2008-07-14
> FMO03542.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTTTCCGCTCCA
CGTCCTTGCTCGCGTTCGGTTGTGCGCTGCTGCTGGTGGCCTCCACATCC
GTGTCCGGTGCTGCCATCGAGAACGCGGTGACCCCGCGGATCCACAGCTC
CGACGAGCTGATCTCGACAATTGTGGATAAGTGCTTCCATGCCAATGCGA
TGCATTGCCTGAAGGAGAAGGTGCTCACCTACCTGGACACGGTAGCCAAT
GTGGAGGAGGAGGTCAGCGGACGCGCCCTGGGTGACGATGTAATCGACAA
GGTCATTGTGGACCGCCTGGGCCGCATTCTGAACACCAACGAGATGAGGT
TGCAGCTGCCACAGACCTTCTTCGCTGGTTCCGTGGTGACCTATCGCTCG
GATCGCGGTTTTGATCTGGAGTTGCCCAAGGATGAGGGTCGCGCTGAGAA
GAAGAACAAGGACAAGCTGTTCCTGCCCCTGCTGCTGCTGATGAAGTTCA
AGCTGAAGGTGATCATGCCCATCTTGCTGGCTCTGATCGGTCTGAAGGCC
ACCAAGGCTCTGATTCTGTCCAAGATTGCCATCAAGCTGGTGCTGGGCTT
CCTGATCTACAACCTTATCCAGAAGTTGGGAGGCATGAAGATGAACATGG
TGCCCATGCCCGCCCCAGTTCCGGCCAGCGAATACGGAGTGCCCAGCACC
ACCGCCTCATCCTACGATCCCAGCAGCTGGGAGCCCATGAGCGGAGGTCC
CTATGCCCGTTGGGACTCGCAGAACCTGGCCTACAGCTCGTACCATCCTA
GCAGCTCGTCGTCCTACTCCTCGGGATCCTCGTCGGGATCCTCGGGTTCT
TCGTCCAGCTACAGCTCGTCCTCCGCAAGCTTTCTAGACCATT
FMO03542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi20-RA | 1264 | CG15188-RA | 94..933 | 35..874 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6340656..6341093 | 437..874 | 2190 | 100 | Plus |
| 3R | 32079331 | 3R | 6340188..6340593 | 35..440 | 2030 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:52:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1507..1581 | 539..466 | 138 | 66.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2407..2478 | 537..466 | 126 | 63.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2300..2370 | 536..466 | 121 | 63.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2559..2655 | 563..466 | 118 | 59.2 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2375 | 529..464 | 114 | 63.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6800 | 529..466 | 113 | 64.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2455..2523 | 537..466 | 110 | 63.9 | Minus |
FMO03542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:47 Download gff for
FMO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi20-RA | 88..934 | 27..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:47 Download gff for
FMO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi20-RA | 90..936 | 27..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:05 Download gff for
FMO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi20-RA | 90..936 | 27..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:05 Download gff for
FMO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6340175..6340590 | 13..437 | 97 | -> | Plus |
| 3R | 6340657..6341096 | 438..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:47 Download gff for
FMO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2165897..2166312 | 13..437 | 97 | -> | Plus |
| arm_3R | 2166379..2166818 | 438..878 | 99 | | Plus |
