FMO03543.5prime Sequence
1232 bp (988 high quality bases) assembled on 2008-07-14
> FMO03543.5prime
CGTATAGCATAATTATACGAAGTTATCAGTCGACATGTTTATGGTCGTGT
GTTCCAATTTAAGGCGTCCCGGGCACGTGGGCGCCGCATCTGCAGCGCGA
AATATAAACTGGCTGATCAGCGAGGGATAAACACCGCCGATCCGGGCAAT
GGCGCGGCCATACGTCCAAGCTCCGGAGGCGCGGCCAGTGCCCGATGAGC
GCTATCCGGGCAGCCAGCAGGATAGGAAGGATATCGCCACCCAGACTGTG
CGGAGCAGCAAGCCCAAAGACCTGCGACCGCCTTCGCCGCCGACGCCGTC
CCAGACCCTAAACTCCTCTTCCCTTCCGCCCCCAATGTCCGACCAGGATG
CTGATCCCTCCCTGGATGTGCCCACCGGCGTGGCGATGCCCTACAACATC
GACTGGATATTCCCTAGGCTGAGAAACCCCTCGAAGTTCTGGTACGTGGT
CAGCCAGTTCGGCGTCTCCGCCGTTGGAATCTTCAGCAAGGTTGTGCTGA
TGTTTTTGAATAAACCCCGCGTCTATAACAGGGAGCGACTGATCCAGCTG
ATAACGAAGCGACCCAAGGGCATTCCCCTGGTCACCGTGTCCAACCACTA
CTCCTGCTTCGACGATCCTGGGCTGTGGGGCTGCCTTCCCCTGGGAATTG
TCTGCAATACCTATAAAATTCGTTGGTCAATGGCCGCTCACGACATTTGC
TTCACTAACAAGCTGCACTCGCTCTTCTTCATGTTTGGCAAGTGCATACC
TGTTGTGCGTGGCATCGGTGTCTACCAGGATGCCATCAACCTGTGCATCG
AGAAAGCCGCACTGGGCCATTGGATCCATGTGTTTCCCGAAAGTAAGGTG
AACATGGATAAAGAGGAGCTGCGTCTCAAGTGGGGCGTGGGCAGGATCAT
CTACGAGTCGCCAAAGATCCCCATAATTCTGCCCATGTGGCACGAGGGCA
TGGACGATCTGTTGCCCAATGTGAGCCCTTTGTGATACAGCGTTGTAAGC
AGGTGACGCTGAATGTTGGCCAGCCATTGGACTCAACGACTTTATTCTGG
AACCTAAAAAAACGACAGTACGGAGCCCACGGCCGCGGAAGCTCATTAAG
AACAAATCAGAAGCTTTCCGAACTGTGCGGCGGAAACAGAGAATTGCACA
GAAGAGGGCAAGTAAGCTTCGAGCCATTGCTGGGCGCGCGGTCCAGGTAT
GTGACAAAACCTATAACCATATACTCTATGTC
FMO03543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Taz-RA | 1776 | CG8766-RA | 357..1489 | 35..1161 | 5125 | 97.5 | Plus |
| Taz-RC | 1174 | CG8766-RC | 70..1080 | 157..1161 | 4530 | 97.3 | Plus |
| Taz-RD | 1323 | CG8766-RD | 103..1112 | 158..1161 | 4525 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12754408..12754751 | 500..157 | 1705 | 99.7 | Minus |
| 2R | 25286936 | 2R | 12753454..12753817 | 1098..737 | 1445 | 95.6 | Minus |
| 2R | 25286936 | 2R | 12753890..12754127 | 738..501 | 1190 | 100 | Minus |
| 2R | 25286936 | 2R | 12755936..12756058 | 157..35 | 600 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:47 has no hits.
FMO03543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:41 Download gff for
FMO03543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tafazzin-RA | 347..1437 | 29..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:52 Download gff for
FMO03543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taz-RA | 351..1441 | 29..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:55 Download gff for
FMO03543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Taz-RA | 351..1441 | 29..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:55 Download gff for
FMO03543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12753457..12753816 | 738..1095 | 96 | <- | Minus |
| 2R | 12753891..12754127 | 501..737 | 100 | <- | Minus |
| 2R | 12754408..12754750 | 158..500 | 99 | <- | Minus |
| 2R | 12755936..12756064 | 29..157 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:52 Download gff for
FMO03543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8640962..8641321 | 738..1095 | 96 | <- | Minus |
| arm_2R | 8641396..8641632 | 501..737 | 100 | <- | Minus |
| arm_2R | 8641913..8642255 | 158..500 | 99 | <- | Minus |
| arm_2R | 8643441..8643569 | 29..157 | 97 | | Minus |
