FMO03544.5prime Sequence
833 bp (833 high quality bases) assembled on 2008-07-14
> FMO03544.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGATCCGTTAA
GGCAGCGATTTTGCTCGGTAGCTTTTTGCTGCTGTTGGCAGTGCCCGTAC
ATTCGGCACCTGGTAGCCTCAACGGTCGAGTGGTGGGCGGTGAGGATGCC
GTGAAAAATCAGTTTCCCCACCAGGTGTCCCTGAGGAACGCCGGCTCCCA
CAGCTGTGGAGGTTCGATTCTGTCCAGGAACTACGTCTTAACCGCTGCCC
ATTGTGTAACCAATCAGGACTCAAATGGCAATTCCGTTCCAATTGCTGCG
GAGCGTTTCACCATTCGAGCGGGCTCCAACGATCGATTCAGCGGTGGAGT
CCTTGTCCAGGTGGCCGAGGTAATTGTCCACGAGGAGTATGGTAACTTCC
TTAACGACGTTGCTCTGCTGCGACTAGAGAGCCCACTGATCCTGTCCGCG
AGTATTCAGCCCATCGATCTACCCACTGCGGATACTCCAGCGGATGTGGA
CGTCATCATTTCCGGCTGGGGAAGGATCAAACACCAGGGAGACTTGCCAC
GCTATCTGCAGTACAACACCCTGAAGTCCATTTCCTTGGAGAGGTGCGAC
GAACTGATCGGCTGGGGAGTCCAGAGCGAGTTGTGCCTCATCCACGAGGC
CGATAATGGAGCGTGCAATGGGGACTCCGGTGGTCCGGCCGTATATAACA
ACCAAGTGGTGGGCGTGGCCGGGTTCGTGTGGTCCGCCTGTGGAACGAGC
TATCCAGATGGATATGCCAGGGTGTACTACCACAACGAATGGATTAGAAT
AACTCGGATGTGAAAGCAAGCTTTCTAGACCAT
FMO03544.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1304-RA | 893 | CG1304-RA | 17..796 | 37..815 | 3875 | 99.9 | Plus |
| Ser6-RA | 901 | CG2071-RA | 36..755 | 54..773 | 2165 | 87.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20964624..20965403 | 815..37 | 3850 | 99.9 | Minus |
| X | 23542271 | X | 20962751..20963470 | 773..54 | 2100 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:21:19 has no hits.
FMO03544.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:42 Download gff for
FMO03544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 14..800 | 37..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:36 Download gff for
FMO03544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 17..803 | 37..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:18 Download gff for
FMO03544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1304-RA | 17..803 | 37..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:18 Download gff for
FMO03544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20964617..20965403 | 37..822 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:36 Download gff for
FMO03544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20835644..20836430 | 37..822 | 99 | | Minus |
