FMO03545.5prime Sequence
891 bp (891 high quality bases) assembled on 2008-07-14
> FMO03545.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGTTTACATACACTT
CCCCAACAATTTAACCGAAGAGGAGCAAATGCTGCAGGCCAAGTATCAGA
AACTCAAGAAAAAGAAAAAGGCACTGCAAGCGCACAAGGCGCCCAAGCCG
GAGCCGGAGAGCTCCTTGACCTTGAAGCGTCCCACGGATGCGCGAGATGC
CCGTGAAGTGGCCAGGAAACTAATCAAAAGCGGCGCCATTCCCGCCATCC
AGAAGCAGACCAAGCAAGATCAAACCTCCTTCAAGCGGCCCAAAGGACAG
GAAAGAGCCAAGCGCTCCACCTCGGAAACCACTGTTGCCTCCTACCAGCC
CTTTTCGTCTACGCAGAACGACGTGGCCCAGGAGACGATCATTAGTGAGA
TCATTAAGGAGGAGCCGCGTCGACAGAATCTCTACCAACACTTCGCCACC
GAGCGGGATCGAGAGGAGCGCGGCATGCCCGAGAAGGTGCCCATGGACAC
AGCGCAGCCAGAGAAGCCACGGGCCGGCAATACCATCTTCGTGTCCGGCA
ACAAGGTCACCGAGGATTTCTTAAAAAAGACATTCAACGACTACGGCACC
ATTGTCAATGTCTCCATGGAGATCGAAAAGAGTCGCGGCTTTGTTTCCTT
CGCCAAACCCGAGTCGGCAGATCGCGCCATTGCGGAGATTCATGGCAAGA
ATGTGAATGGCATCAACTTGCAGGTGCAGTTGGCTAGACGCCAGCCCCAG
ATTGAGCCCATTAACGATGCCTCCTCGTCGGCAGTCTGGTCATCTATTGC
CGCCAGCAAATCACAAAAGGGTAGCCACAAGGACCACCGCGAGATGGTTC
AATACGATGAAGACTTCTTGCTCGCAAGCTTTCTAGACCAT
FMO03545.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nelf-E-RA | 1227 | CG5994-RA | 135..976 | 32..873 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8600087..8600606 | 632..113 | 2600 | 100 | Minus |
| 3L | 28110227 | 3L | 8599831..8599999 | 799..631 | 845 | 100 | Minus |
| 3L | 28110227 | 3L | 8600663..8600745 | 114..32 | 415 | 100 | Minus |
| 3L | 28110227 | 3L | 8599693..8599767 | 873..799 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:45 has no hits.
FMO03545.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:12 Download gff for
FMO03545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nelf-E-RA | 125..977 | 25..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:34 Download gff for
FMO03545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nelf-E-RA | 130..982 | 25..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:28 Download gff for
FMO03545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nelf-E-RA | 130..982 | 25..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:28 Download gff for
FMO03545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8599687..8599766 | 800..879 | 96 | <- | Minus |
| 3L | 8599831..8599997 | 633..799 | 100 | <- | Minus |
| 3L | 8600087..8600604 | 115..632 | 100 | <- | Minus |
| 3L | 8600663..8600750 | 25..114 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:34 Download gff for
FMO03545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8592787..8592866 | 800..879 | 96 | <- | Minus |
| arm_3L | 8592931..8593097 | 633..799 | 100 | <- | Minus |
| arm_3L | 8593187..8593704 | 115..632 | 100 | <- | Minus |
| arm_3L | 8593763..8593850 | 25..114 | 95 | | Minus |
