FMO03546.5prime Sequence
711 bp (711 high quality bases) assembled on 2008-07-14
> FMO03546.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGCTGGGACGAC
GACCAAGGAGCGCCTGGAGCGTCTGATTAACGCTAAAAAGCAGCTGGAGG
CGCAGATCAACAGAAACGGACAGATCCTGGCCGCCAACGACAATGTGGGC
ATGAGTGGACCACTGGTGGACGCCGAGGGTTTTCCGCGCAACGACATCGA
CGTTTACCAGGTGCGCCTAGCGCGACAGACGATCATCTGCCTGCAGAACG
ACCACAAGGAGCTGATGAACCAGATCCAGACGCTGCTCAACCAATATCAC
AGCGAGATTGCCACCACAGATCCGGAGCTGGTGAACCGCGCCTCCGCTTT
GGACCTGGACAGCGACCGTTCACCCGGTGGCGCTAATATCACGGATCTTG
CTCCTGCACGCGCCATCGTGGTGGTCAATCTGGTCAGTCCCGATTCGCCC
GCCGAAAGAGCTGGTCTCTGTGCCGGCGATGCCATCCTCCGCTTTGGCTC
CATCAATAGCGGCAACTTCAAGGGAGATCTCGCCCAGATTGGCGAGCTGG
TGCGCAACATGCAGAGCCAGAATGTCCAGCTGAAAGTGAAGCGCGGCGAG
CAGCAGTTGGACCTCATCCTGGTGCCGAAAACGTGGAGTGGACGCGGTCT
CCTGGGCTGCAACATCGTCCTGCCGCCCGAGGCGATGGATCACGCAAGCT
TTCTAGACCAT
FMO03546.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9588-RA | 1226 | CG9588-RA | 152..812 | 33..693 | 3290 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13675800..13676127 | 463..136 | 1625 | 99.7 | Minus |
| 3R | 32079331 | 3R | 13675506..13675736 | 693..463 | 1155 | 100 | Minus |
| 3R | 32079331 | 3R | 13676428..13676530 | 135..33 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:52 has no hits.
FMO03546.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:02 Download gff for
FMO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9588-RA | 145..808 | 27..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:27 Download gff for
FMO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9588-RA | 149..812 | 27..693 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:13 Download gff for
FMO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9588-RA | 149..812 | 27..693 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:13 Download gff for
FMO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13675506..13675736 | 463..693 | 100 | <- | Minus |
| 3R | 13675801..13676127 | 136..462 | 99 | <- | Minus |
| 3R | 13676428..13676537 | 29..135 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:27 Download gff for
FMO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9501228..9501458 | 463..693 | 100 | <- | Minus |
| arm_3R | 9501523..9501849 | 136..462 | 99 | <- | Minus |
| arm_3R | 9502150..9502259 | 29..135 | 96 | <- | Minus |
