FMO03547.5prime Sequence
1241 bp (1064 high quality bases) assembled on 2008-07-14
> FMO03547.5prime
TCGTATAGCATAGATTATACGAAGTTATCAGTCGACATGGCTGTCATCAC
GGAACATGGCGGCACCACCTCCTCTCCCCCGGAAAACAACAATAGCATCG
GAAACGGAAAACACCGGGTCAATGGCCATCAGTTGAGCACCTCGCTGACC
ATACCGGAGTTCTTTGCCCACAAGAACATCTTTGTCACCGGCGGCACTGG
ATTCCTGGGCACCGTTCTTATCGAGGCTCTGCTGGACACACATCCCGACA
TTGGAACCATCTACGTTTTGGTCCGGGGCAAGCGCAAGTTTGATCCGAAC
GAGCGGATTCGTCGCCTGCTCCAAAAGCCGATTTTCGAGAAATACTCGGA
GAAGACTCTGTCCAAGGTGGTCCCAGTGGTTGGCGAACTGAGCGAACCAA
ACTTTGGCTTTGGCCCCGAGCTCCTGCAGGAGCTGATCGATCGGGTCAAT
GTGATCTACCACAGTGCAGCCACCATCAAGTTCAGCTCCCCGCTGCGCAC
CGCCATTCGCACCAATCTCACGGGAACGATGCGCACCATTGAGCTGGCCA
AACAATTGAAGCAACTGGCGGCGTACATCTATTGCTCCACGGCCTTCTGC
AATAGCAACAATCGTGGTCTGATTGCCGAGGAGGTGTACAAGTCACAGTT
CGATCCGTACGAGATGATGAAGATGGCCGAAGATGACTCCGCCTGGGAGG
ATTTCACCGATCAAAAGTGCAAGGGCTATATCCGTGATCATCCCAATACG
TATACGTTCACCAAGAATCTGTCGGAGAATTTGCTGATGGCCGAGATGTC
GGGACTGCCAGCAGCCATAGTTAGGCCATCGATTGTTTATGGAACCCTGG
AGCACCCGATGAAGGGCTGGGTGGGCAATGCAAACTCTGGTCACCTGGGC
TTCTTGGCCGGCTTCGTGAAGGGAATTTTTCGCACCATGTGCGGGATGCA
ATGCTGTGATCGACATCATACCATGCGACTATGTGATCAACTCATCACTG
GTTATGGGCTGGTACGTGGGCACCCGGAGTTGAGCAGCTGAGATCATACA
TTGCACGTCGGGAGAGTAATCCTCTGATCCTCGCCGAGTCTGCACGATCA
TCACCGATAGTGTGGGACGGCATCCGCCCGAACAGTTTGTTTGAACGTGA
CGAATTGGCCACGAATGGCTACATCTGTTCTCCATCGTGTTCATTTGGCG
TCGCACGCTAGGTCTCTTTTCTCATACCACGCAGAAGAGAC
FMO03547.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8303-RD | 2176 | CG8303-RD | 152..1314 | 36..1181 | 5265 | 97.7 | Plus |
| CG8303-RC | 2200 | CG8303-RC | 176..1338 | 36..1181 | 5265 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16596436..16596941 | 835..330 | 2530 | 100 | Minus |
| 2R | 25286936 | 2R | 16597904..16598198 | 330..36 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 16596082..16596383 | 1128..835 | 1060 | 94.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:58 has no hits.
FMO03547.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:35 Download gff for
FMO03547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RB | 228..1346 | 29..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:42:33 Download gff for
FMO03547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 173..1291 | 29..1143 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:17 Download gff for
FMO03547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8303-RC | 173..1291 | 29..1143 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:17 Download gff for
FMO03547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16596067..16596382 | 836..1143 | 94 | <- | Minus |
| 2R | 16596436..16596940 | 331..835 | 100 | <- | Minus |
| 2R | 16597904..16598201 | 29..330 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:42:33 Download gff for
FMO03547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12483572..12483887 | 836..1143 | 94 | <- | Minus |
| arm_2R | 12483941..12484445 | 331..835 | 100 | <- | Minus |
| arm_2R | 12485409..12485706 | 29..330 | 98 | | Minus |
