FMO03551.5prime Sequence
1098 bp (1051 high quality bases) assembled on 2008-07-14
> FMO03551.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACCAGGAGAA
TTTCCACGGCTCCAGCTTGCCGCAGCAGCTACAGAACCTCCACATCCAGC
CGCAGCAGGCGTCCCCCAATCCTGTCCAGACGGGATTTGCTCCACGGCGG
CACTATAATAACCTTGTCGGCCTGGGCAATGGAAATGCCGTCAGTGGTAG
TCCGGTGAAGGGTGCTCCGCTGGGGCAGCGCCATGTGAAGCTCAAGAAGG
AGAAGATATCCGCCCAGGTTGCGCAGCTGTCTCAGCCAGGTCAGCTGCAG
CTGTCAGATGTTGGTGATCCTGCCTTGGCGGGCGGATCGGGCTTACAAGG
TGGAGTCGGCCTTATGGGCGTAATATTGCCCAGCGACGAGGCCTTAAAGT
TCGTCAGCGAAACGGACGCCAATGGACTGGCCATGAAGACGCCCGTCAGC
ATTCTGCAAGAGCTGCTAAGCCGACGAGGAATTACTCCCGGCTATGAACT
TGTCCAGATCGAGGGCGCCATACATGAGCCGACCTTCCGGTTTCGCGTGT
CCTTTAAAGACAAGGATACGCCCTTCACGGCCATGGGGGCAGGACGATCG
AAGAAGGAGGCCAAGCATGCGGCGGCCCGTGCGCTCATCGACAAGCTGAT
CGGCGCGCAGCTGCCGGAATCGCCTAGCAGCTCCGCTGGTCCGTCGGTGA
CTGGGCTCACGGTCGCCGGAAGCGGAGGAGACGGCAATGCCAATGCCACA
GGCGGAGGAGATGCCAGCGACAAGACCGTTGGTAATCCGATTGGCTGGTT
GCAGGAAATGTGCATGCAACGGCGATGGCCACCGCCGTCGTACGAAACGG
AACGGAAGTGGGTCTTCCCCACGAGCGGCTCTTTACGATCGCCTGCTCGA
TACTCAACTACCGCGAGATGGGCAAGGGCAAAAGCAGGAAGATAGCCAAG
CGCTTGCCGCCCACCGCATGTGATGCGTCTGCAGGAGACTCCCATCGATT
CGGGCAAAATCAGCGACGCATCTGCGGCGATTTGGAGGCGCGACCCGCAG
TATGAATTATTATGGTGAATGGAAGATTTCTCTGTGCCGAACCTCTGA
FMO03551.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| loqs-RF | 2014 | CG6866-RF | 180..1243 | 36..1090 | 5010 | 98.6 | Plus |
| loqs-RB | 2017 | CG6866-RB | 180..1243 | 36..1090 | 5010 | 98.6 | Plus |
| loqs-RD | 1334 | CG6866-RD | 180..1186 | 36..1038 | 4905 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13382939..13383664 | 36..761 | 3630 | 100 | Plus |
| 2L | 23513712 | 2L | 13383737..13384017 | 762..1038 | 1175 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:44:33 has no hits.
FMO03551.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:49 Download gff for
FMO03551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| loqs-RB | 181..1252 | 29..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:35 Download gff for
FMO03551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| loqs-RB | 177..1248 | 29..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:31 Download gff for
FMO03551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| loqs-RB | 177..1248 | 29..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:31 Download gff for
FMO03551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13382936..13383664 | 29..761 | 99 | -> | Plus |
| 2L | 13383737..13384022 | 762..1043 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:35 Download gff for
FMO03551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13382936..13383664 | 29..761 | 99 | -> | Plus |
| arm_2L | 13383737..13384022 | 762..1043 | 97 | -> | Plus |
