FMO03552.5prime Sequence
1183 bp (1034 high quality bases) assembled on 2008-07-14
> FMO03552.5prime
CGTATAGCATAATTAAACGAAGTTATCAGTCGACATGTGTGACGATGAGG
TTGCCGCATTGGTCGTGGACAATGGTTCCGGAATGTGCAAGGCAGGATTC
GCCGGCGATGATGCGCCCCGCGCCGTCTTCCCCTCGATTGTGGGTCGTCC
CCGTCATCAGGGCGTAATGGTGGGCATGGGACAGAAGGACTCCTATGTTG
GTGATGAGGCCCAGAGCAAGCGTGGTATCCTCACCCTGAAATACCCCATC
GAGCACGGCATCATCACCAACTGGGACGATATGGAGAAGATCTGGCACCA
CACTTTCTATAACGAGCTGCGCGTCGCCCCCGAGGAACACCCCGTCCTGC
TGACCGAGGCCCCCCTGAACCCCAAGGCCAATCGCGAGAAGATGACCCAG
ATCATGTTCGAGACCTTCAACGCACCCGCCATGTATGTGGCCATCCAGGC
TGTGCTCTCGCTGTACGCCTCCGGTCGTACCACCGGTATTGTCCTCGACT
CCGGTGACGGTGTCTCCCACACCGTGCCCATCTACGAGGGTTACGCCCTG
CCCCACGCCATCCTGCGTCTGGATCTGGCTGGTCGCGATTTGACCGACTA
CCTGATGAAGATCCTGACCGAGCGCGGTTACTCATTCACCACCACCGCTG
AGCGTGAAATCGTTCGCGACATCAAGGAGAAGCTGTGCTATGTTGCCCTG
GACTTTGAGCAGGAGATGGCCACCGCCGCCGCCTCCACATCCCTGGAGAA
GTCATACGAGCTTCCCGACGGACAGGTGATCACCATCGGCAACGAACGTT
TCCGCTGCCCAGAGTCGCTGTTCCAGCCCTCTTTCCTGGGAATGGAATCG
TGCGGCATCCACGAGACCGTGTACAACTCGATCATGAAAGTGCGATGTGG
ACCATCCGTAGGATCTGTATGCTAACATCGTCATGTCGGGGTGGTACCAC
CATGTACCCTGGTATTGCCGATCGTATGCAGAAAGGAGATCACGGCCCTG
GCGCCGTCCACCATCAAGATCAAGATCATTGCCCCAACGAGCGCAAGTTA
CTCGGTCTGGATCGGTGCTCATTCTGACTTCCTGTCCACCTTTCAGCAGA
TGTGGATCTCAAGCAGAAATACGACGAGTTCGGCAGGATGTTCACGGCAA
GTGCCTTCGCAGAGCTTTTCTAAACACTGCGTT
FMO03552.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act87E-RC | 1853 | CG18290-RC | 82..1182 | 35..1134 | 5105 | 98.1 | Plus |
| Act87E-RB | 1643 | CG18290-RB | 158..1258 | 35..1134 | 5105 | 98.1 | Plus |
| Act87E-RA | 1567 | CG18290-RA | 82..1182 | 35..1134 | 5105 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13426604..13427704 | 35..1134 | 4840 | 97.6 | Plus |
| X | 23542271 | X | 5902698..5903798 | 35..1134 | 3430 | 89 | Plus |
| 2R | 25286936 | 2R | 20944846..20945904 | 77..1134 | 3400 | 89.7 | Plus |
| 3R | 32079331 | 3R | 15440616..15441543 | 35..964 | 2825 | 87.4 | Plus |
| 3R | 32079331 | 3R | 15441601..15441777 | 961..1134 | 310 | 86 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:44:02 has no hits.
FMO03552.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:50 Download gff for
FMO03552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act87E-RB | 151..1264 | 28..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:27 Download gff for
FMO03552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act87E-RA | 73..1186 | 28..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:52 Download gff for
FMO03552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act87E-RA | 75..1188 | 28..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:52 Download gff for
FMO03552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13426597..13427710 | 28..1138 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:27 Download gff for
FMO03552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9252319..9253432 | 28..1138 | 97 | | Plus |
