FMO03557.5prime Sequence
515 bp (515 high quality bases) assembled on 2008-07-14
> FMO03557.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGACGGCAGTG
CCGCATTGTCCCCCGAAACAGGACCTTCCACCGCCGGGCGGCTACAAGAA
GATACCCTTTGCCCGCGTGCCACCGAAGAGCTACTTCACAGGCTTCACCA
CCATCGGCACCTATGTGGTTGTGACAGCCGTTGGCCTGGGCATCTACTAC
TTGACCGCCAAGAAGGTGAAGCGCGACGAGATCGAGATGCGTTCCGCCCA
GAATGTCATCTTTCCCATTTTGGTCGCCGAGCGGGATCGCGAATTCCTGC
GCCAGTTGCGACGCAATCGGGACGAGGAGGCCGAGCTGATGAAGAACGTG
CCCGGCTGGGAGGTGGGCACCTGGTATGGTGAGCCCGTTTTCAAGACCCT
GCCCGAGGATACCCTGGTCACGCCCATTTTCAAGGAGTTCTACGCCCACT
CCGACTGGAAGTCGTACGCCAAGCGTGCCCACTTGAAGCTCTGGTCCGCA
AGCTTTCTAGACCAT
FMO03557.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3446-RC | 1265 | CG3446-RC | 120..582 | 35..497 | 2315 | 100 | Plus |
| CG3446-RB | 713 | CG3446-RB | 120..582 | 35..497 | 2315 | 100 | Plus |
| CG3446-RA | 957 | CG3446-RA | 120..582 | 35..497 | 2315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6349699..6350057 | 497..139 | 1795 | 100 | Minus |
| X | 23542271 | X | 6350121..6350228 | 142..35 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:45:37 has no hits.
FMO03557.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:05 Download gff for
FMO03557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3446-RA | 112..583 | 29..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:37 Download gff for
FMO03557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3446-RA | 114..585 | 29..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:23 Download gff for
FMO03557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3446-RA | 114..585 | 29..501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:23 Download gff for
FMO03557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6349695..6350054 | 142..501 | 99 | <- | Minus |
| X | 6350122..6350234 | 29..141 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:37 Download gff for
FMO03557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6243728..6244087 | 142..501 | 99 | <- | Minus |
| arm_X | 6244155..6244267 | 29..141 | 98 | | Minus |
