FMO03558.5prime Sequence
721 bp (721 high quality bases) assembled on 2008-07-14
> FMO03558.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGGACTACAAGT
TCCTGTTCAAAATCGTCCTGGTGGGCAATGCTGGTGTTGGAAAAACATGC
CTAGTGCGCCGCTTTACTCAGGGTCTATTTCCACCTGGCCAGGGTGCCAC
CATTGGTGTGGATTTCATGATTAAGACCGTGGAGGTGGAGGGCGAGAAGA
TCAAGCTACAAATCTGGGACACCGCCGGCCAGGAGCGGTTCCGATCCATC
ACGCAAAGCTACTATCGATCGGCTCACGCCTTGATCCTGGTGTACGACAT
CAGCTGCCAGCCCACATTTGACTGCCTGCCGGACTGGCTGCGCGAGATCC
AGGAGTATGCCAACTCCAAGGTACTCAAAATCCTGGTGGGTAACAAGACG
GACAGGGATGATCGAGAGATACCCACCCAGATTGGCGAAGAGTTCGCCAA
GCAGCATGACATGTACTTCTTGGAGACATCCGCCAAGGAGGCAGAGAATG
TAGAGCGTCTGTTCTACGAGATTGCCGCCGAATTGATTGGTCAGGCAAGG
AGCAAGGATGGCAGTAGTTCGGCCGCAGCGGCAGCCGCCCAGCGTCAGTC
GGAGGGCAGCTCCATCGGACTGGGGAGCTTCAGTGCCAAGGCAGCGCAGA
GCAATTGCTGTGGCGGACTCGCCAGCGGCGGCTCCAACTCTAGTCAAGGC
GGCGCAAGCTTTCTAGACCAT
FMO03558.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab30-RD | 1305 | CG9100-RD | 435..1103 | 35..703 | 3345 | 100 | Plus |
| Rab30-RC | 2055 | CG9100-RC | 443..1111 | 35..703 | 3345 | 100 | Plus |
| Rab30-RB | 1970 | CG9100-RB | 358..1026 | 35..703 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7031437..7032105 | 703..35 | 3345 | 100 | Minus |
| X | 23542271 | X | 20252273..20252324 | 191..242 | 215 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:45:10 has no hits.
FMO03558.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:54 Download gff for
FMO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab30-RA | 358..1039 | 27..709 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:46 Download gff for
FMO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab30-RB | 350..1031 | 27..709 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:51 Download gff for
FMO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab30-RB | 350..1031 | 27..709 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:51 Download gff for
FMO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7031432..7032110 | 29..709 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:46 Download gff for
FMO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7031432..7032110 | 29..709 | 98 | <- | Minus |
