FMO03559.5prime Sequence
1219 bp (1029 high quality bases) assembled on 2008-07-14
> FMO03559.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGGTCGTCCTGC
TCGCATTATTTTGTGCAGTCCAGGGCCAGGCATTGGTCCTCAAGGAGCTG
CACACCCTGCATCAGTGGACGAACCTCAGTTTGGGCGACGATCTGTCCAA
GGGCAATCGCTTTCTGCCGGTGGATGTGGACATTGAGTACGGCGATGAGG
GCAGGCATCGCACCTTTCTCACGATTCCGCGACTGGGGATGGCCACACCC
TTCACACTGGCCACCGTCATTGCGGAGCACAATGAGCTGGTGGAGAATCC
CAGACTGGAACCGTATCCCAACGAGGAGTGGCACGTGCCACCCAACAATT
GCTCCGGCATCACCTCAGCCATTAGGACTTATATCGACGAGTGCTGGCGA
CTCTGGGTGGTGGATTCAGGGCAGGTAAACTCCCTGCAGTTGTGCCCGCC
ACAAATTCTCACATTTGATTTGGTGAAGGACGAACTAGTCCAACGACACG
CACTTCCGCCCGATTCCTACATTCCCAGCGTATCCATCTTCACGGCTTTG
GTGGTGGATCTGGCCGAGAGGGGCACACCCAACCGATGTGTTGGCGGCAG
AGCGTATATAGCCGATGCCTGGGGTTATGGTCTAATCGTGTTTGACTCCC
TGACGGGACGATCCTGGCGCATAGAGCATGAGTCCATGAAGCCGTCGCCC
TTGCTGAGATTAGGACGCTCCAGCAACTCGCAGGCGGGAATATTTACAGT
GAGCCTCAGTCCCAGCGAAGTGGAAGACCGCTTTCTGTACTTTCACACGC
TGAACTCCTTTAATGAGATGAGGGTTCCGCTCTCCCTGATCAACAACGAG
ACCTTCTGGAAGTCTGCGAATGCCAGCAAGGATAGCTTCCACAGCCTGGG
CACCCGAGGAATCCAGTGCGAATCGGAGTGATGGATCAGTCGGGGATCTC
TACTGCAGCCTCATCAGTTTAGGGCGCTGGTGAAATGGGAGGAGTCCGTG
TCCACTACACGGCGGATGACCTGCGTGTGGTGCCTACATCCGCCAAGATC
AAGTTCGTCACGGGCTTAAGATCAACAGAATTCCAGGAAAAAGAAGACCT
GTGGCTTGACACCACCGAAACCTTTGTTGGCGGACTGCCCGCAAACGAGT
CAGCTTCATAATGGGTGCCGAAACGCTGACCTCGCTGCCAACACCCGTGT
TACAGTGGGGCGCCCGCGA
FMO03559.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-e3-RA | 1319 | CG17045-RA | 64..1263 | 34..1209 | 5170 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13404001..13404394 | 776..383 | 1970 | 100 | Minus |
| 3R | 32079331 | 3R | 13404459..13404807 | 382..34 | 1745 | 100 | Minus |
| 3R | 32079331 | 3R | 13403626..13403937 | 1078..775 | 1130 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:09 has no hits.
FMO03559.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:03 Download gff for
FMO03559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e3-RA | 57..1100 | 25..1065 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:18 Download gff for
FMO03559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e3-RA | 59..1102 | 25..1065 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:52 Download gff for
FMO03559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-e3-RA | 59..1102 | 25..1065 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:52 Download gff for
FMO03559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13403640..13403935 | 777..1065 | 97 | <- | Minus |
| 3R | 13404001..13404394 | 383..776 | 100 | <- | Minus |
| 3R | 13404459..13404812 | 25..382 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:18 Download gff for
FMO03559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9229362..9229657 | 777..1065 | 97 | <- | Minus |
| arm_3R | 9229723..9230116 | 383..776 | 100 | <- | Minus |
| arm_3R | 9230181..9230534 | 25..382 | 98 | | Minus |
