Clone FMO03560 Report

Search the DGRC for FMO03560

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:35
Well:60
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG17737-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03560.5prime Sequence

383 bp (383 high quality bases) assembled on 2008-07-14

> FMO03560.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCATCCAGAAT
TTAAACACTCGTGACCCCTTTGCTGATGCAATCAAGGGCAATGATGATGA
TATTCAAGACGGGCTAGTGCATATAAGAATCCAGCAGAGGAACGGTCGCA
AGACGCTAACCACTGTCCAGGGCCTGTCCGCGGAGTATGACTTGAAGAAG
ATAGTCCGCTCCTGCAAGAAGGAATTCGCATGCAATGGCACTGTAATCGA
GCACCCAGAGTATGGTGAGGTTCTGCAGCTCCAGGGCGATCAGCGTGAGA
ACATCTGTCAATGGTTGACGAAGGTGGGTCTAGCTAAGCCGGATCAGCTG
AAGGTGCACGGCTTCGCAAGCTTTCTAGACCAT

FMO03560.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG17737-RA 681 CG17737-RA 159..488 36..365 1650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3223769..3223928 63..222 800 100 Plus
3L 28110227 3L 3224312..3224457 220..365 730 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:45:28 has no hits.

FMO03560.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:45 Download gff for FMO03560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 140..488 24..375 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:53 Download gff for FMO03560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 149..497 24..375 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:02 Download gff for FMO03560.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17737-RA 149..497 24..375 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:02 Download gff for FMO03560.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3223770..3223927 64..221 100 -> Plus
3L 3224314..3224466 222..375 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:53 Download gff for FMO03560.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3223770..3223927 64..221 100 -> Plus
arm_3L 3224314..3224466 222..375 97   Plus