FMO03561.5prime Sequence
1235 bp (1028 high quality bases) assembled on 2008-07-14
> FMO03561.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTGCTGGCCAC
GCCCCCTGTGAGCAAGGGCGGTAACGCGGGCGGCCTCTTCATGGACCAGT
ATCAGCAGTACGCGGCCCACTGTGAAACCGCCGACAGTGGCAATGGCAGT
GACCTGGAGAGCACCGGATTGCCCACCAAACCGGATGACAGCGAGGAGAG
TGGCCCCTCCTCGCTGGGCAGCGACTCCATGCACGGGAGCAGCACGGAGT
ACGTGCGACAGTCCGCCTCCCAGCCCAGTGGCCAGCGGCAGCGACAGAAG
TCCTTGCGGGTCCTGGGTGCCCTGCTCCCCGACAGCCTGCTCCGCGACAT
ACGGGACCGGAGGAGCACCGAGTATGTGGTACAGTTCTCGCAGCCAGAGG
ATGAGGAGAAGATCCAGGTCCCCGACAAGATTCCGGAGAAACCCAGTCCG
TTCCGCCTGGCCCGCGAATCGCTGAGCGAGGACAAAATAGAGGAGCTGCG
GGCCGCAGTGGAGCGGGCCAACTTCGTTCAAACCGGTGAGGAGACGCTGG
ACAGCATCGATGCCACATCGCAGTCTCTTCCAGCCAGCAGCAACATCGGC
GGACACCGCGGCAATATCAATTACAAGTATGCTGACGACCAATACTACAG
CTTTCACATCAACGAGCACGAGAACTTCGGTGCGAGAAGCGCGAGAAGTG
GCGACGAGGCGGACCACTCCACGGGAGCGGGATCGGAGGCTGGCTCCGAC
AGCGGGATCCTAACGGAGCAGCAAGACCTCTTCGCCGGCTATCGGGACGT
GCGATGTGGGGCCAGTTCCACCCAGTCCACTATCCGATCGGCCAAGGGAA
CGGTGCGGGGCGTCAAGAACCGTGTGCGCAATGGAATAGCCACGTTCTTG
CAGCTCCAGCAGCAGCTCAATGCCAAGAACTTCAAGGAGAAAGACCTGGG
CAAGGGGTGCTGTACACCACAGCATGGGCATCATCCGGGAAACCTAACAC
GAAGTGGTGCCAACGTCAGCAGATCTGCGCACCTGCTGGTCAAGTTTGGA
GGAGCGGGACGTTCTTCATGACGTGGAGTACAGGGCGGGAAATGGCGCAG
GCGATGCAGACGGTTCAGGTGGCGGGGTGCCCAGCTGTACGTCAAGGGTC
AGCCAATCAGGAACCGAACCTGAACGGAAGACGATCCGGGGAGCGTGAAG
GACGGTGCTCTAAAACCGTATCAGAGTCACTAATG
FMO03561.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31559-RA | 2003 | CG31559-RA | 180..1296 | 37..1153 | 5060 | 97.7 | Plus |
| CG12206-RC | 2348 | CG12206-RC | 1490..1732 | 837..1080 | 390 | 80 | Plus |
| CG12206-RB | 2653 | CG12206-RB | 1795..2037 | 837..1080 | 390 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6156166..6157056 | 927..37 | 4440 | 99.9 | Minus |
| 3R | 32079331 | 3R | 6150886..6151050 | 1088..926 | 315 | 92.9 | Minus |
| X | 23542271 | X | 3471885..3471961 | 913..837 | 250 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:38 has no hits.
FMO03561.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:06 Download gff for
FMO03561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31559-RA | 161..1199 | 23..1062 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:47 Download gff for
FMO03561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31559-RA | 169..1207 | 23..1062 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:50 Download gff for
FMO03561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31559-RA | 169..1207 | 23..1062 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:50 Download gff for
FMO03561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6156166..6157073 | 17..927 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:47 Download gff for
FMO03561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1981888..1982795 | 17..927 | 99 | <- | Minus |
