FMO03567.5prime Sequence
1074 bp (1054 high quality bases) assembled on 2008-07-14
> FMO03567.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGGCAATGAC
CATGCTGGTGTTGGGCTTCCAGTTGCTTGCGCTTTTTTCGATCGCCGGCG
CGCTGCTTATCTACCTGATTTGTAAGGTGCGCGAGGATAGCGCATCTGCC
AATGCGGATAGTCATCCCAGTCGGGTGGTCCTGATAACCAGTGCGGATAC
CGCATTGGGTCTTCAATTGTGCACCCATTTGGCTAACAAGGGTTATCGGG
TTTTTGCTGGAATGAAAGAGGCCCAAGATTCGCTACCCGCCAAACTTCTT
TGCGGTTGGATGAAGATCCGAGAGTACAGTGAGGAACCCATTGCAGGCAC
AATTATTCCGATGAGATTGGATGTCACCCGAGAGGATGTGCTTCGCGAGG
CCACCGTTATTATAGGCGCTAATCTAAATGCAGATGAGCGCGGTATTGCG
GCCGTAATTAACACTAGTGGCAGTGTTTTCCGAGGCCAGGTTGAATCGCA
GAATGTCCAGCAGTGGGAACACATGCTCAGAACCAACATCCTGGGCACCT
TACGTGTGGCCAAGGCCTTTGTGTGTTTTCTCCGTCCGACACGTGGAAGA
CTCCTTTACTTGGGAGGAGTAAGTGGAGGTGGAAATGCTCGAAACGAAGG
TGATGGACTGGTTGCCTTTAACGCCTCACGCGTTGCCGTAGACAAGTGTG
CCGAAGAGCTGCGCAAGGAGCTGCATCCCTATGGCGTCAGTGTGGTCGCT
TTGGATACATGCGGCATGACGGCGGAGTCATTGTACAAGGCACCAGTGGC
ACAAACCATGTCCTTGGTCGTTGGGGCTCCTACGCAGTATACAGCGGACG
TGCTCAGTCCGGACGCTCTTCATGTGATCGAGCGGGCGTTGTGGGACTAT
GTTCCGCAACAGCGATATGCGCTTCTAAGTCATACAAATACCAATTTGCG
TTGCCATGTCCGCTCCTCCGCTGCGACTTCAGAGGCCGGTAAGCTTCAAC
AGTCGGCGAGAAGCGCCAGTCAGTCGGGTGCAAGCTTTCTAAAACCATTC
GTTGGCCCCGGGCCCGGTAATTGT
FMO03567.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13377-RB | 1411 | CG13377-RB | 149..1136 | 37..1027 | 4820 | 99.4 | Plus |
| CG13377-RA | 1601 | CG13377-RA | 339..1326 | 37..1027 | 4820 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 258893..259661 | 805..37 | 3845 | 100 | Minus |
| X | 23542271 | X | 258610..258828 | 1027..806 | 850 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:53:54 has no hits.
FMO03567.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:54 Download gff for
FMO03567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13377-RA | 334..1331 | 28..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:27 Download gff for
FMO03567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13377-RA | 334..1331 | 28..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:03 Download gff for
FMO03567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13377-RA | 334..1331 | 28..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:03 Download gff for
FMO03567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 258604..258828 | 806..1033 | 96 | <- | Minus |
| X | 258893..259666 | 28..805 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:27 Download gff for
FMO03567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 152637..152861 | 806..1033 | 96 | <- | Minus |
| arm_X | 152926..153699 | 28..805 | 99 | | Minus |
