FMO03569.5prime Sequence
1127 bp (1058 high quality bases) assembled on 2008-07-14
> FMO03569.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGACTCAGTTTGGT
CGCATGTGGTGGGTGCCACTGCTGCAGTGGCTTAACATCGGATCAGGATT
AGGTGTGGGTGCCTGGAGCTTTGGACCAGTTCAATCGGATGCCAGCCAGG
ATACAAATCGAGTGCCGCAACCCAGCGATGTGGGCAGCACTGCGAATCAC
ACAATACTCGCCCGGCAGCTGATTGTGGGCACCCTGCTGCCACCGCAGGT
TGCGCCGGGCACCTGGCCACCTGTGCCCTCCATCGTGAGTCCCGGAACCA
GCTACTGCCAGTGCGTTCCGCCCGGATCATGCGCCAATCCTCTGCCCACC
GCACCCAGCGATGGCAGTGGCCAGATTGACATCAGGATTGTCAACAATGG
AGGATATCCCACTGTTCCAACCACATCTTCCACTCTGACATGTAGCTATG
GTCTGGTGGCCTGCTGCCAGGCGGGAAGCTATCAGTGTGGTCGGAGGTTC
CCGCCTCCACCGGGATCCACCACCGCTGCGCCTGGACAGGCCAGTTTTGG
AGCATATCCTTGGCAGGCGGCACTGCTTACCACCGCGGATGTTTATCTGG
GTGGCGGAGCACTGATCACCGCACAACATGTTCTGACCGCCGCCCACAAA
GTTTACAATCTGGGGCTCACTTACTTTAAGGTTCGTCTGGGGGAATGGGA
TGCTGCCAGTACGAGCGAACCGATTCCCGCCCAGGATGTGTACATCTCGA
ATGTGTACGTCAATCCGTCCTTCAATCCCAACAATCTGCAGAACGATGTG
GCCATCCTGAAGTTGTCCACACCCGTTTCGCTGACCAGCAATCCACTGTG
GGCACTGTCTGTCTGCCCCACCACCAGTTTCGTGGGTCAGAGATGCTGGG
TAGCTGGGTGGGGCAAGAATGACTTCGGTGCCACCGGGAGCGTACCAGCC
ATTGAGAGCAAGTGATGTGCCCCTGATTCCCAATGCCATTGCCAGGCGCG
CTGCAAGCAACCCGACTGGGCTCCTCTTCGTTCTTCAGTCCATCAGCTTC
ATTTGTGGCCGCGAAAAGCTGGCCAAGATGCCTGCACCGGGGAAATGGGG
GATCTCTCCGCTTGTCCTGCAACCACC
FMO03569.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13318-RA | 1271 | CG13318-RA | 20..1102 | 36..1116 | 4950 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8771434..8771869 | 1093..664 | 1510 | 95 | Minus |
| 3R | 32079331 | 3R | 8771927..8772184 | 665..408 | 1290 | 100 | Minus |
| 3R | 32079331 | 3R | 8772248..8772450 | 407..205 | 1015 | 100 | Minus |
| 3R | 32079331 | 3R | 8772504..8772672 | 204..36 | 845 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:11:35 has no hits.
FMO03569.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:55 Download gff for
FMO03569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13318-RA | 6..1106 | 27..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:30 Download gff for
FMO03569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13318-RA | 11..1111 | 27..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:33 Download gff for
FMO03569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13318-RA | 11..1111 | 27..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:33 Download gff for
FMO03569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8771406..8771868 | 665..1127 | 94 | <- | Minus |
| 3R | 8771928..8772184 | 408..664 | 100 | <- | Minus |
| 3R | 8772248..8772450 | 205..407 | 100 | <- | Minus |
| 3R | 8772504..8772681 | 27..204 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:30 Download gff for
FMO03569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4597650..4597906 | 408..664 | 100 | <- | Minus |
| arm_3R | 4598226..4598403 | 27..204 | 97 | | Minus |
| arm_3R | 4597128..4597590 | 665..1127 | 94 | <- | Minus |
| arm_3R | 4597970..4598172 | 205..407 | 100 | <- | Minus |
