Clone FMO03571 Report

Search the DGRC for FMO03571

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:35
Well:71
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31647-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03571.5prime Sequence

361 bp (361 high quality bases) assembled on 2008-07-14

> FMO03571.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGATTGATGGGCATC
TTGCGTACAAATTAACACCGGAATTACTCCTCGTGCACTGCAGGCCAAGT
TCGGCGAACTTCCAACGATTTTCGACTCCACCCCAAACCCAAAAAAAAAA
AGACATAACAAAAAAAGTAACGAAAAAGGAAGATGCGTTTTGGCCCATTT
CAAATGAAGCCGACTTTCAATTAGGCAAAAACTTGGCAGCAAACCAAAAA
CAAAAGCAAGCTAATGAGACGACGACTGAGTTTGGCCGGAGGTGCGATCG
TGACTTCGAATGCGACCAGTGTCAAAGGCGCAGCTGGATATTCGCAAGCT
TTCTAGACCAT

FMO03571.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 22:44:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5436767..5437048 315..34 1410 100 Minus
Blast to na_te.dros performed 2014-11-28 22:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 3525..3577 125..177 103 66 Plus

FMO03571.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:51 Download gff for FMO03571.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31647-RA 615..927 30..343 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:42 Download gff for FMO03571.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5436684..5436711 316..343 100 <- Minus
2L 5436767..5437051 30..315 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:42 Download gff for FMO03571.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5436684..5436711 316..343 100 <- Minus
2L 5436767..5437051 30..315 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:42 Download gff for FMO03571.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436684..5436711 316..343 100 <- Minus
arm_2L 5436767..5437051 30..315 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:42 Download gff for FMO03571.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5436684..5436711 316..343 100 <- Minus
arm_2L 5436767..5437051 30..315 99   Minus