FMO03574.5prime Sequence
795 bp (795 high quality bases) assembled on 2008-07-14
> FMO03574.5prime
CGTATAGCATACATTAAACGAAGTTATCAGTCGACATGCGTTTCCACATG
AAGAGCGGCAGCGAGGACAATGACATTGTGGCGGCCACAGCCACTGCCGA
GCATATCCGCAAGTTTGTCTTCAGCGGATCACCCGCCGAGCGACTGGAGA
TCAAAATACCTGAGCTGCTTCAGGGTGCCTACTCCTTCTACACATGGCCT
TGCGCACCAATTTTAGCCCACTTCCTGTGGGAGCGCCGACAGACACTGGC
GGGCAAGCGCATCCTGGAGCTGGGAAGCGGCACCGCCCTGCCCGGCATTC
TGGCGGCCAAATGCCGCGCCCAAGTGGTACTTACTGACAACTGCATTCTG
CCCAAGTCACTGGCCCATATCCGAAAGTCCTGCCTGGCCAATCAACTGCA
GCCGGGCGTTGATATCGATGTGGTGGGCCTGAGTTGGGGCCTGCTGCTGA
ACAGCGTGTTCCGACAACCGCCTCTGGACCTTATCATTGCAGCAGACTGC
TTCTACGATCCCAGCGTGTTCGAGGATATCGTGGTCACAGTTGCTTTTCT
GCTGGAGCGAAATGCCGGGGCCAAATTTATATTTACATACCAGGAGCGGA
GCGCCGACTGGTCCATAGAGGCGCTGCTCAAGAAGTGGAAGCTGCAGGCT
TTACCCATCAGCATGGAGGACATTGGCAAGGAGTCGGGAGTGGATCTGCT
GGAGTTTATGGGCGGACACACTATTCATCTTCTGGAGATCACGCGCATCG
AAAAGCGATGGCTCAATAAATACAACAGCAAGCTTTCTAGACCAT
FMO03574.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5013-RA | 973 | CG5013-RA | 119..859 | 36..777 | 3655 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16049966..16050579 | 163..777 | 2995 | 99.5 | Plus |
| 3R | 32079331 | 3R | 16049788..16049916 | 36..164 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:34:44 has no hits.
FMO03574.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:57 Download gff for
FMO03574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5013-RA | 118..861 | 36..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:50 Download gff for
FMO03574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5013-RA | 119..862 | 36..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:53 Download gff for
FMO03574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5013-RA | 119..862 | 36..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:53 Download gff for
FMO03574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16049788..16049916 | 36..164 | 100 | -> | Plus |
| 3R | 16049968..16050582 | 165..781 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:50 Download gff for
FMO03574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11875510..11875638 | 36..164 | 100 | -> | Plus |
| arm_3R | 11875690..11876304 | 165..781 | 99 | | Plus |
