FMO03578.5prime Sequence
1209 bp (1036 high quality bases) assembled on 2008-07-14
> FMO03578.5prime
TTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGCGGATGTCC
TGGAGAAAAGCTCACTGCTGGATGCTGTGCCACCACTAGGCGACCCCCAC
CCACCGCTGCCCCACCAGCAGCTGCAACAGGAAGCAGCAGCAGCAGCAGC
AGCAAATGCCGCACCACCAGCACCACCGCAGCAGCAACAACCACCACCCC
ATCAGCTGCAGCAGCAGCAGCCGCAACAACAGCAACTGCAACAGAAGCCA
GCAAATGCGAGGGCTAATCAGGATCAAAAAGAGGGCGACAATGACAGCGG
CGTGGATGAGTCCACTCAGGAGAAGGATCGCAACGGACCCAACTCGCCCA
GTTCGCCCGTAAAAACGCCCACATCGACCTCATCGAAGCCGGACAAGTCG
GGCACGTCGCGTCCACCGAGTGCCACGCCCTCGAACAAGTCAGCCCCCAA
ATCGCGCAGCGCCTCCAAGAACCGCTTGCTCCTCAAGACCCCAGAGCCCG
AGCCAGTGAAGAAAGTTCCAATGAACAAGGTACAAGTCGGACATGCGCCT
TCACCCAATCTGAAGGCGGTACGCTCCAAGATCGGATCCCTGGACAATGC
CACCTATAAGCCGGGTGGCGGCCACGTGAAAATCGAGTCCAAGAAGATCG
ACATCAAGGCGGCACCGCGCATCGAGGCCAAGAACGACAAGTACATGCCA
AAGGGCGGCGAGAAGAAGATAGTTACAACAAAGTTGCAGTGGAACGCCAA
GTCCAAAATCGGTTCGCTGGAGAATGCCGCCCACAAGCCGGGAGGCGGGG
ACAAGAAGATCGAGACCCTGAAGATGGACTTCAAGGACAAGGCCAAGCCG
AAAGTGGGCTCGACGGCCAATGTGAAACATCAGCCGGGTGGCGGAGACAT
CAGGATCCAAACGCAAAAACTAGAAATTAAGGCACAAAGCAAAGTTGGCT
CTTTGGATAATGTAAAGCACAGCCCGGTGCGGTGAGAAGAAGATTTCGAT
GATAGATTATTTGAAATGTGACACTCTTGTGCACTGACAAACCACACCAG
AGTCAACTACCATCCATGACGCTTCTGGCGCTGATTGAAATAAATCCAAC
AAGCGCCAGCCTTTCTGACCATTCGATTGGCCCGCGGGCCCAAGGTAAGT
GCCTATGCCATAACTGAGTCATTCTAGATACACAACTGAGCTAAGAGAAA
TCTGCGTCA
FMO03578.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tau-RB | 2425 | CG45110-RB | 548..1609 | 38..1085 | 4915 | 98.2 | Plus |
| tau-RA | 2243 | CG45110-RA | 366..1427 | 38..1085 | 4915 | 98.2 | Plus |
| tau-RF | 1802 | CG45110-RF | 366..1383 | 38..1045 | 4800 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27656206..27656449 | 281..38 | 1220 | 100 | Minus |
| 3R | 32079331 | 3R | 27646041..27646245 | 718..514 | 1025 | 100 | Minus |
| 3R | 32079331 | 3R | 27646336..27646527 | 515..324 | 960 | 100 | Minus |
| 3R | 32079331 | 3R | 27645227..27645412 | 902..717 | 915 | 99.5 | Minus |
| 3R | 32079331 | 3R | 27643880..27643974 | 996..904 | 375 | 97.9 | Minus |
| 3R | 32079331 | 3R | 27647564..27647610 | 326..280 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:12:15 has no hits.
FMO03578.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:56 Download gff for
FMO03578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tau-RA | 357..1441 | 33..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:44 Download gff for
FMO03578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tau-RA | 361..1445 | 33..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:53 Download gff for
FMO03578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tau-RA | 361..1445 | 33..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:53 Download gff for
FMO03578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27643821..27643973 | 905..1046 | 91 | <- | Minus |
| 3R | 27645225..27645410 | 719..904 | 98 | <- | Minus |
| 3R | 27646041..27646243 | 516..718 | 100 | <- | Minus |
| 3R | 27646336..27646525 | 326..515 | 100 | <- | Minus |
| 3R | 27647565..27647608 | 282..325 | 100 | <- | Minus |
| 3R | 27656206..27656454 | 33..281 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:44 Download gff for
FMO03578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23469543..23469695 | 905..1046 | 91 | <- | Minus |
| arm_3R | 23470947..23471132 | 719..904 | 98 | <- | Minus |
| arm_3R | 23471763..23471965 | 516..718 | 100 | <- | Minus |
| arm_3R | 23472058..23472247 | 326..515 | 100 | <- | Minus |
| arm_3R | 23473287..23473330 | 282..325 | 100 | <- | Minus |
| arm_3R | 23481928..23482176 | 33..281 | 99 | | Minus |
