FMO03580.5prime Sequence
579 bp (579 high quality bases) assembled on 2008-07-14
> FMO03580.5prime
TCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGGAAAGTTACT
ATCAAAAATTTTCGGCAACAAGGAAATGCGAATTCTCATGCTCGGACTGG
ACGCGGCTGGAAAAACAACGATTCTGTACAAACTGAAACTTGGCCAATCT
GTTACAACGATACCCACTGTGGGCTTTAATGTGGAAACCGTCACCTATAA
GAATGTCAAGTTCAATGTGTGGGACGTCGGTGGGCAGGATAAGATTCGAC
CGCTATGGCGACACTATTACACGGGTACACAGGGTCTGATCTTCGTCGTG
GATTGTGCGGATCGGGATCGGATAGACGAGGCGCGCACGGAGCTGCATAG
GATAATTAACGATAGGGAGATGCGCGACGCCATCATACTGATATTTGCTA
ACAAGCAGGATCTGCCTGATGCAATGAAACCCCATGAAATCCAGGAAAAA
CTAGGTTTAACTAGAATAAGAGATCGCAATTGGTATGTACAACCATCATG
TGCCACATCCGGCGATGGCCTGTCCGAGGGCCTCATTTGGTTAACGTCGA
ACCATAAGTTAGCAAGCTTTCTAGACCAT
FMO03580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf51F-RE | 1357 | CG8156-RE | 281..806 | 36..561 | 2630 | 100 | Plus |
| Arf51F-RA | 1352 | CG8156-RA | 276..801 | 36..561 | 2630 | 100 | Plus |
| Arf51F-RC | 1370 | CG8156-RC | 294..819 | 36..561 | 2630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15323841..15324147 | 115..421 | 1520 | 99.7 | Plus |
| 2R | 25286936 | 2R | 15324201..15324341 | 421..561 | 705 | 100 | Plus |
| 2R | 25286936 | 2R | 15323483..15323565 | 36..118 | 415 | 100 | Plus |
| 3L | 28110227 | 3L | 22869850..22869953 | 164..61 | 220 | 80.8 | Minus |
| 4 | 1348131 | 4 | 1124442..1124648 | 98..304 | 210 | 73.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:00:51 has no hits.
FMO03580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:59 Download gff for
FMO03580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RD | 284..817 | 27..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:42 Download gff for
FMO03580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 286..819 | 27..561 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:10 Download gff for
FMO03580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf51F-RC | 286..819 | 27..561 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:10 Download gff for
FMO03580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15323475..15323565 | 27..118 | 96 | -> | Plus |
| 2R | 15323845..15324147 | 119..421 | 100 | -> | Plus |
| 2R | 15324202..15324341 | 422..561 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:42 Download gff for
FMO03580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11210980..11211070 | 27..118 | 96 | -> | Plus |
| arm_2R | 11211350..11211652 | 119..421 | 100 | -> | Plus |
| arm_2R | 11211707..11211846 | 422..561 | 100 | | Plus |
