FMO03581.5prime Sequence
454 bp (454 high quality bases) assembled on 2008-07-14
> FMO03581.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGGATAGTG
ATTTGGATGCCTTACGCGCGCAGCGCATGTCCCAAATGCAGTCGCAATTC
GGCGGCGGCAATGATGCGGAAAAGCAACAAGCCCAGCAGGAGCAGATGCG
CGCCCAGGAGGAAATGAAGCACTCGATATTATCCCAAGTTCTGGACCAGC
AGGCCAGGGCACGACTTAATACCCTCAAAGTCAGCAAGCCGGAGAAGGCG
CAAATGTTCGAGAACATGGTCATCCGCATGGCCCAGATGGGTCAGGTGCG
TGGAAAACTTGATGACGCCCAGTTCGTCAGCATCCTCGAAAGCGTCAATG
CTCAGATGCCGCAGAGCAAGTCCTCCGTGAAATACGATCGGCGGCGGGCG
GCCATCGATAGCGACGACGACGAGGATTACGGCTGCGCAAGCTTTCTAGA
CCAT
FMO03581.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PDCD-5-RA | 650 | CG13072-RA | 137..535 | 38..436 | 1995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16231196..16231416 | 436..216 | 1105 | 100 | Minus |
| 3L | 28110227 | 3L | 16231474..16231588 | 215..101 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 16231839..16231902 | 101..38 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:53:30 has no hits.
FMO03581.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:50 Download gff for
FMO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PDCD-5-RA | 127..529 | 30..436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:22 Download gff for
FMO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PDCD-5-RA | 133..535 | 30..436 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:51 Download gff for
FMO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PDCD-5-RA | 133..535 | 30..436 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:51 Download gff for
FMO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16231196..16231416 | 216..436 | 100 | <- | Minus |
| 3L | 16231474..16231588 | 101..215 | 100 | <- | Minus |
| 3L | 16231840..16231906 | 30..100 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:22 Download gff for
FMO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16224296..16224516 | 216..436 | 100 | <- | Minus |
| arm_3L | 16224574..16224688 | 101..215 | 100 | <- | Minus |
| arm_3L | 16224940..16225006 | 30..100 | 94 | | Minus |
