FMO03582.5prime Sequence
1197 bp (956 high quality bases) assembled on 2008-07-14
> FMO03582.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAATTTGGAGCTAC
TACAATCTTTCGGACAAAACTACCCAGAGGAGTTCGACGGCTCGCTGGAT
TGCATTTCGTTGGCCGTGACGTGTGCCTTTAACAAATACGGAACCCTTTT
GGCCGTGGGATGCAATGATGGCCGCATTGTAATCTGGGATTTTCTGACGA
GGGGCATTGCCAAGATTATTTCGGCCCATGTGCATCCCGTTTGCAGTCTC
AGTTGGACCAGGAATGGTCACAAGTTACTTTCAGCTTCCACGGACAACAA
TGTGTGCATTTGGGATGTGCTAACCGGCGAACTGGAACACAAGTATAGGT
TTCCATCGCCTGTGCTGAAAGTACAGTTCGATCCCCGAAATGACAACCGA
CTTTTGGTGTGCCCCATGCGATATGCCGCCGTTCTTGTAGAGGTCGGCGG
AACTCACCGCTGCCTGCCCTTGGATTCCGATGGCGACTTGAACATCGTGG
CTTCTTTCGATCGCAGAGGCAAACACATCTACACAGGCAACGCCAAGGGA
AAAATACTCGTACTGGATGTTGAAACCTTTGAGGTGGTCGCCAGTTGTCG
CATTATTGTAGGCACCTCAAGTGCAACGGCTGTAAAAAGCATCGAGTTTG
CGAGGCGTGGAGACGCATTTCTAATCAACACCTCAGATCGAGTTATTCGT
GTTTACGACTCAAAAGAAATAATCACTCTAGGCAAAGACGGCGAACCGGA
ACCTATACAAAAGCTACAGGACTTGGTCAATAAAACCACCTGTAAAAAGT
GCTGCTTCTCCGGTGATGGGGAGTACATTTGCGCTGGCAGTGCTCGCCAG
CATGCTCTTTACATATGGGAAAGTCTATTGCAACCTGATGAAGATCCTGC
ATGGCACCAAGGTGATCTGCTCTTGACGTGTGTGCATCCTGTGCGACTAT
TATTGCCAGCATTAGCTCCGGACTGGTATCCATTTGGCTCGAATCAATGA
AACTGGTCTGCTTTGACCATGATTCCAGGATAAACAAATGTAAGTACGAG
AGCGGGAGTCGAGTCGACATGCGGAGCAAGACAGTCGTGACTGAATGCCT
ACCGCTCATCGACAGTAATTGAGTAGACTGCCAACGGATCCGACTGCTTT
TGCTCCTGAAAATGCCAGTACGCAATGACTTCACTTCTGTGCCTCGC
FMO03582.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rbbp5-RA | 1853 | CG5585-RA | 34..1105 | 35..1083 | 4560 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20347613..20347833 | 274..54 | 1105 | 100 | Minus |
3L | 28110227 | 3L | 20347351..20347560 | 482..273 | 1050 | 100 | Minus |
3L | 28110227 | 3L | 20347108..20347289 | 663..482 | 895 | 99.5 | Minus |
3L | 28110227 | 3L | 20322877..20323058 | 663..482 | 880 | 98.9 | Minus |
3L | 28110227 | 3L | 20346665..20346875 | 987..784 | 630 | 94.3 | Minus |
3L | 28110227 | 3L | 20346935..20347054 | 783..664 | 600 | 100 | Minus |
3L | 28110227 | 3L | 20322704..20322823 | 783..664 | 585 | 99.2 | Minus |
3L | 28110227 | 3L | 20322514..20322644 | 912..784 | 510 | 96.2 | Minus |
3L | 28110227 | 3L | 20323120..20323202 | 482..400 | 370 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:34:41 has no hits.
FMO03582.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:08 Download gff for
FMO03582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5585-RA | 31..1102 | 35..1083 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:49 Download gff for
FMO03582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbbp5-RA | 34..1105 | 35..1083 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:52 Download gff for
FMO03582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rbbp5-RA | 34..1105 | 35..1083 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:52 Download gff for
FMO03582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20346935..20347054 | 664..783 | 100 | <- | Minus |
3L | 20347108..20347289 | 482..663 | 99 | <- | Minus |
3L | 20347352..20347558 | 275..481 | 100 | <- | Minus |
3L | 20347613..20347833 | 54..274 | 100 | <- | Minus |
3L | 20347891..20347909 | 35..53 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:49 Download gff for
FMO03582.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20340035..20340154 | 664..783 | 100 | <- | Minus |
arm_3L | 20340208..20340389 | 482..663 | 99 | <- | Minus |
arm_3L | 20340452..20340658 | 275..481 | 100 | <- | Minus |
arm_3L | 20340713..20340933 | 54..274 | 100 | <- | Minus |
arm_3L | 20340991..20341009 | 35..53 | 94 | | Minus |