Clone FMO03582 Report

Search the DGRC for FMO03582

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:35
Well:82
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5585-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03582.5prime Sequence

1197 bp (956 high quality bases) assembled on 2008-07-14

> FMO03582.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAATTTGGAGCTAC
TACAATCTTTCGGACAAAACTACCCAGAGGAGTTCGACGGCTCGCTGGAT
TGCATTTCGTTGGCCGTGACGTGTGCCTTTAACAAATACGGAACCCTTTT
GGCCGTGGGATGCAATGATGGCCGCATTGTAATCTGGGATTTTCTGACGA
GGGGCATTGCCAAGATTATTTCGGCCCATGTGCATCCCGTTTGCAGTCTC
AGTTGGACCAGGAATGGTCACAAGTTACTTTCAGCTTCCACGGACAACAA
TGTGTGCATTTGGGATGTGCTAACCGGCGAACTGGAACACAAGTATAGGT
TTCCATCGCCTGTGCTGAAAGTACAGTTCGATCCCCGAAATGACAACCGA
CTTTTGGTGTGCCCCATGCGATATGCCGCCGTTCTTGTAGAGGTCGGCGG
AACTCACCGCTGCCTGCCCTTGGATTCCGATGGCGACTTGAACATCGTGG
CTTCTTTCGATCGCAGAGGCAAACACATCTACACAGGCAACGCCAAGGGA
AAAATACTCGTACTGGATGTTGAAACCTTTGAGGTGGTCGCCAGTTGTCG
CATTATTGTAGGCACCTCAAGTGCAACGGCTGTAAAAAGCATCGAGTTTG
CGAGGCGTGGAGACGCATTTCTAATCAACACCTCAGATCGAGTTATTCGT
GTTTACGACTCAAAAGAAATAATCACTCTAGGCAAAGACGGCGAACCGGA
ACCTATACAAAAGCTACAGGACTTGGTCAATAAAACCACCTGTAAAAAGT
GCTGCTTCTCCGGTGATGGGGAGTACATTTGCGCTGGCAGTGCTCGCCAG
CATGCTCTTTACATATGGGAAAGTCTATTGCAACCTGATGAAGATCCTGC
ATGGCACCAAGGTGATCTGCTCTTGACGTGTGTGCATCCTGTGCGACTAT
TATTGCCAGCATTAGCTCCGGACTGGTATCCATTTGGCTCGAATCAATGA
AACTGGTCTGCTTTGACCATGATTCCAGGATAAACAAATGTAAGTACGAG
AGCGGGAGTCGAGTCGACATGCGGAGCAAGACAGTCGTGACTGAATGCCT
ACCGCTCATCGACAGTAATTGAGTAGACTGCCAACGGATCCGACTGCTTT
TGCTCCTGAAAATGCCAGTACGCAATGACTTCACTTCTGTGCCTCGC

FMO03582.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Rbbp5-RA 1853 CG5585-RA 34..1105 35..1083 4560 96.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20347613..20347833 274..54 1105 100 Minus
3L 28110227 3L 20347351..20347560 482..273 1050 100 Minus
3L 28110227 3L 20347108..20347289 663..482 895 99.5 Minus
3L 28110227 3L 20322877..20323058 663..482 880 98.9 Minus
3L 28110227 3L 20346665..20346875 987..784 630 94.3 Minus
3L 28110227 3L 20346935..20347054 783..664 600 100 Minus
3L 28110227 3L 20322704..20322823 783..664 585 99.2 Minus
3L 28110227 3L 20322514..20322644 912..784 510 96.2 Minus
3L 28110227 3L 20323120..20323202 482..400 370 96.4 Minus
Blast to na_te.dros performed on 2014-11-28 20:34:41 has no hits.

FMO03582.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:08 Download gff for FMO03582.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5585-RA 31..1102 35..1083 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:30:49 Download gff for FMO03582.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 34..1105 35..1083 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:52 Download gff for FMO03582.5prime
Subject Subject Range Query Range Percent Splice Strand
Rbbp5-RA 34..1105 35..1083 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:52 Download gff for FMO03582.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20346935..20347054 664..783 100 <- Minus
3L 20347108..20347289 482..663 99 <- Minus
3L 20347352..20347558 275..481 100 <- Minus
3L 20347613..20347833 54..274 100 <- Minus
3L 20347891..20347909 35..53 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:30:49 Download gff for FMO03582.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20340035..20340154 664..783 100 <- Minus
arm_3L 20340208..20340389 482..663 99 <- Minus
arm_3L 20340452..20340658 275..481 100 <- Minus
arm_3L 20340713..20340933 54..274 100 <- Minus
arm_3L 20340991..20341009 35..53 94   Minus