FMO03584.5prime Sequence
1242 bp (1055 high quality bases) assembled on 2008-07-14
> FMO03584.5prime
TCGTATAGCATAATAAAACGAAGTTATCAGTCGACATGGAACGATTGCTG
ACCATGTTCGAGGAGGCGGATCCCTTCGCCACGTGGTGGCCCACGATAGC
GGCCCTCACGGTGGGCATTGTGATTACGGTGCGGACCTTAATGAGCGGCC
AGCGCTGTCCGAACGATAATCAAATCAAGGAGCAAATCGTGGTGGTCACC
GGCGGCAACAGCGGCATTGGCTTCGAAATAGCCCAGGCTCTGGCTGGCCG
AGGTGGCCGGATAATCCTCGCCTGCCGCAATCTCGAGGCCGGGAAGCGGG
CGGCGGCCATAATCAAACGTGAGCTGGGCTGCCGCACACCCCTGAATTCC
TTGGATGAGGATGACAATCCGGAGGACAGGTACTTCGTGGAGGCACGCTA
CTTGGACCTCTGTTCGCTGCGCAGTGTCCATCACTTTGCCGGCCAGCTGA
TGGCGGAATTCGAGCGGATCGATGTGCTGGTGAACAATGCCGGAGTGGTA
TTCGCCAACACTCAGATGCCCACCGAGGATGGCTTCGAACGGCACAGCCA
GGTGAACTATCTGGCCCCCTTCCTGTTGACCCACCTGCTCCTGCCACACT
TGCAACGCTCGGAGCAAGGACGCATCCTCTTCGTTTCCGCCCATGCCCAT
CAGGGCGCCAAAATCGATTTCGACGATCCCCTGAATGTGGGCACCTGGTC
GGTGAAGTTCCACGCCCGCGAAGCATTTGCCCACTCCAAGCTCTGCGTGC
TCCTTGCCACCCGTTGGATGGCCAGGGAACTGAAAGGTACCTCGGTCACG
GTCAACTGCTGTACGCCAGGACTCGTCCGTGGAACCCGCCCATTTTCGCA
ACTCGCCGCTGATGTCGTCCCTCTGCGTGAAGGCGGTCACCTATCCGTGG
GATGTGGCTGTTCATGAAGAATGCCTACGAGGGCGCCCAGTGCGCCATCC
GCTTGGCCACCGATCCCCAGCTGAGGGAGTCACCCGGCGAGTACTTCATG
ATTGCGAATTTGCGGCAGTTTCGGTGACGGGCCCAGACAAGGAGTTGGCC
AGAGCTTGTAATATGCAAACCATAAACCCTCGAAAGCGTTACCAGCTTAC
CGTCGAAAGGGAAGGAGTATCGGCCTGGATTGCACCTTGGAATGGAATCT
GACCTGAGCCTGGAGTCCCGGGCGAACGGAACCGGAACGGGACCATCTGG
CACGATAATAGAACTGGCAGGGTAGTGAGTGAGAAGCAACAG
FMO03584.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31235-RB | 2494 | CG31235-RB | 125..1279 | 36..1187 | 5110 | 97 | Plus |
| CG31235-RA | 1564 | CG31235-RA | 125..1279 | 36..1187 | 5110 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18326003..18326659 | 789..133 | 3285 | 100 | Minus |
| 3R | 32079331 | 3R | 18317616..18317765 | 998..848 | 600 | 94.7 | Minus |
| 3R | 32079331 | 3R | 18328720..18328818 | 134..36 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 18325478..18325543 | 851..785 | 285 | 98.5 | Minus |
| 3R | 32079331 | 3R | 18317366..18317482 | 1112..999 | 245 | 84.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:00:47 has no hits.
FMO03584.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:47 Download gff for
FMO03584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31235-RA | 113..1227 | 28..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:40 Download gff for
FMO03584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31235-RA | 116..1230 | 28..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:08 Download gff for
FMO03584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31235-RA | 116..1230 | 28..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:08 Download gff for
FMO03584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18325478..18325541 | 787..851 | 98 | <- | Minus |
| 3R | 18317615..18317761 | 852..998 | 96 | <- | Minus |
| 3R | 18326006..18326658 | 134..786 | 100 | <- | Minus |
| 3R | 18328721..18328831 | 24..133 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:40 Download gff for
FMO03584.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14143337..14143483 | 852..998 | 96 | <- | Minus |
| arm_3R | 14151200..14151263 | 787..851 | 98 | <- | Minus |
| arm_3R | 14151728..14152380 | 134..786 | 100 | <- | Minus |
| arm_3R | 14154443..14154553 | 24..133 | 93 | <- | Minus |
