FMO03585.5prime Sequence
648 bp (423 high quality bases) assembled on 2008-07-14
> FMO03585.5prime
TTCGTATAGCATAATAATACGAAGTTATCAATCGACATGGGGAGCATAGA
AAAGGCGTGCATATCGGGATTTCTATGCCGACTGTGTTCAGAGATGCACC
GCACAGTAATACATATTTATAGTGATCATGGCCAGCGTTTGTGTCTTGTT
GAGAAAATCAACGGTTACCTACCAATTACAATATCTCCGACTGATCCATT
GCCAAAAACCATATGCAAATCATGTCTGCATCGCGTGGAGCAGCATTACT
CGCTCCTGATGCATCTGACGCGGATGCGGGAGGAGCGCAAGTTTAAGTTA
ATCAAATACGAAGCACAAAGAAATCCCTCGATATCCAGCGTGGAATCGGA
AGAGGACGTGATAAATTCAAGCTCGGTTCACGAGTTCCCCAATCGGAATG
AGGAGGATCAAGCGACCCGCCGCAGCGAGTCGACGAGCACCCAAGCTGAA
ACTGGTCCACAGACCCAGGAATCCCAATCCCCCAGGTCAACAAAGACCGC
AGTGTCCACACCAAACAGCAGCGAAAGCCACGATGCCTGTGGTGCTGGGC
CCAACAATAAAGACCGAAAAGAGACTGGCACAGGCAACTCGGAAACGGGT
AGCACTACTCGGGAAGGAACCCATGCAGATGCAAGCTTTCTAGACCAT
FMO03585.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31109-RB | 978 | CG31109-RB | 145..748 | 27..630 | 2900 | 98.7 | Plus |
| CG31109-RA | 870 | CG31109-RA | 145..748 | 27..630 | 2900 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25053599..25053869 | 630..360 | 1295 | 98.5 | Minus |
| 3R | 32079331 | 3R | 25054356..25054509 | 180..27 | 740 | 98.7 | Minus |
| 3R | 32079331 | 3R | 25054042..25054179 | 318..181 | 660 | 98.6 | Minus |
| 3R | 32079331 | 3R | 25053933..25053974 | 360..319 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:59 has no hits.
FMO03585.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:20 Download gff for
FMO03585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31109-RA | 126..732 | 27..634 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:19 Download gff for
FMO03585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31109-RA | 145..751 | 27..634 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:01 Download gff for
FMO03585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31109-RA | 145..751 | 27..634 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:01 Download gff for
FMO03585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25053596..25053868 | 361..634 | 97 | <- | Minus |
| 3R | 25053933..25053974 | 319..360 | 100 | <- | Minus |
| 3R | 25054042..25054179 | 181..318 | 98 | <- | Minus |
| 3R | 25054356..25054504 | 32..180 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:19 Download gff for
FMO03585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20879318..20879590 | 361..634 | 97 | <- | Minus |
| arm_3R | 20879655..20879696 | 319..360 | 100 | <- | Minus |
| arm_3R | 20879764..20879901 | 181..318 | 98 | <- | Minus |
| arm_3R | 20880078..20880226 | 32..180 | 98 | <- | Minus |
