FMO03588.5prime Sequence
962 bp (962 high quality bases) assembled on 2008-07-14
> FMO03588.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCATACAAGGTT
GAAGCTGTTCCCGATTCCTACGCCGCCCTGGGCGAGGGACCCCACTGGGA
TGTTGATCGCCAGAGTCTGTACTACGTGGACCTCGAATCCGCCGGCATTA
ATCGTTATGATTTCAAGCAGAACAAAGTGTACAGGGCTAAAATCGAGGGC
GAGATATTTGCATCGTTCATTCTGCCGGTTGAGAACAAACCGCAGGAGTT
TGCCGTAGGATGCGGTCTTCGTACGGTCATCGTCCAGTGGGATGGAGTCT
CCGCAGTGGCCAAGGTCACTCGCACCCTGTTCGAGGTGCAGCCGGACCTG
AAGGAAAACCGCCTTAATGATGCCAAAACCGATCCCAATGGCCGTTTTTA
CGGTGGCACCATGGCCGACAGTGGCGACATATTCACCCAATGGAAGGGTG
AGCTCTACAGCTGGCAGGCCGGTGGACAGCCCAACGCTATCCGTAGCAAG
GTGGGCATATCCAATGGCCTGGCCTGGGATGTCAAGGCCAAGAAGTTCTA
CTTCATCGACACCAACAACCACGAGGTATTGGCCTATGACTACAATCAGA
GCACCGGCGCCGTAAGCAACCCAAAGGTCATCTTCGATCTGAGGAAGATT
CGGCCCGAAGGACCATTGTTCCCTGATGGCATGACCGTAGACACCGATGG
CAATATCTACGTGGCCACCTTCATGGTGGCACCGTCTTCAAGGTCAATCC
AAGCACCGGTAAAATTCTGCTGGAGATCAAAATTCCAACCACCCAAATCA
CCTCGGTGGCTTTTGGAGGTCCCAATTTGGATATTTTGTATGTGACAACC
GCCAACAAGTTCGACCAGCCATACCAGCTGGTACCACCTTCCAAGTTCAC
TGGGCTCAATGCAAGGGTTACGGCCGGCGTTATGTTGAAGATCGGCAAGC
TTTTCTAGACAA
FMO03588.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| smp-30-RD | 1297 | CG7390-RD | 322..1230 | 36..943 | 4370 | 99 | Plus |
| smp-30-RC | 1102 | CG7390-RC | 127..1035 | 36..943 | 4370 | 99 | Plus |
| smp-30-RB | 1219 | CG7390-RB | 53..961 | 36..943 | 4370 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14746407..14747125 | 753..36 | 3545 | 99.9 | Minus |
| 3R | 32079331 | 3R | 14746159..14746350 | 943..752 | 715 | 93.8 | Minus |
| X | 23542271 | X | 12016003..12016718 | 36..750 | 425 | 70.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:55 has no hits.
FMO03588.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:04 Download gff for
FMO03588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smp-30-RB | 49..957 | 36..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:37 Download gff for
FMO03588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smp-30-RB | 53..961 | 36..943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:42 Download gff for
FMO03588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smp-30-RB | 53..961 | 36..943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:42 Download gff for
FMO03588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14746159..14746348 | 754..943 | 95 | <- | Minus |
| 3R | 14746407..14747129 | 31..753 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:37 Download gff for
FMO03588.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10571881..10572070 | 754..943 | 95 | <- | Minus |
| arm_3R | 10572129..10572851 | 31..753 | 99 | | Minus |
