FMO03591.5prime Sequence
668 bp (668 high quality bases) assembled on 2008-07-14
> FMO03591.5prime
TTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGCTGGAGTTGC
AACTTTGCGGAGATTTGTCAGCCGGCGACTTGAGCGAAATTCCCAAAATG
GGACACCAAAGGGCCACGGATACGGGACATCGCCAGATCCGGAGCCACAG
AAAATCCGACTGCCGGACTTTTCCAGCCAGATGCCTCCTGCTGCTACTCG
GCGTTCTACTTCTGAGCATGGAGCTCGTCGAATGCGCGCTGCGCAATGTC
AATTTAATAATCGAACCACCGGCAGTGCGACGGGGCCAGCATGTGGTGCT
GCGGTGCATGTACGACCTGGACGGGGCTCCACTGTACTCGGCTAAGTTCT
ACCGTGGCCAGCTGGAGTTCTACCGCTACACGCCCGGCGAGTTTCCCAAT
ACGAAAGTGTTTCCATTCCCCGGCATTCACGTGGATGTAAGCAGCTCCAA
TGCCACCCAGGTGCTGTTGCGCAACGTGGGATTCGGTCTCTCTGGCAACT
TTTCATGCGAAGTGACCGCCGATGCCCCGCTCTTCTCAACCGCCACCGCA
GTGGACACCATGCAAGTTGTTGAACTGCCCGAGAAGCGTCCGCAGGTTTT
CACGGAACACACACGCTACGAGCCCGGCGATGTCCTGCGGGCCAATTGCA
GCACACCGCCGTCGCGTC
FMO03591.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| beat-IIa-RB | 2829 | CG14334-RB | 747..1382 | 33..668 | 3165 | 99.8 | Plus |
| beat-IIa-RA | 2984 | CG14334-RA | 902..1537 | 33..668 | 3165 | 99.8 | Plus |
| beat-IIb-RC | 2442 | CG4135-RC | 1036..1418 | 269..651 | 420 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17332490..17332710 | 441..221 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 17345399..17345587 | 221..33 | 930 | 99.5 | Minus |
| 3R | 32079331 | 3R | 17331018..17331153 | 572..437 | 680 | 100 | Minus |
| 3R | 32079331 | 3R | 17327271..17327367 | 668..572 | 485 | 100 | Minus |
| 3R | 32079331 | 3R | 17239703..17239860 | 426..269 | 220 | 75.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:12 has no hits.
FMO03591.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:27:49 Download gff for
FMO03591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIa-RA | 893..1535 | 26..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:10 Download gff for
FMO03591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIa-RA | 895..1537 | 26..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:36 Download gff for
FMO03591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| beat-IIa-RA | 895..1537 | 26..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:36 Download gff for
FMO03591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17327271..17327366 | 573..668 | 100 | <- | Minus |
| 3R | 17331018..17331153 | 437..572 | 100 | <- | Minus |
| 3R | 17332495..17332709 | 222..436 | 100 | <- | Minus |
| 3R | 17345399..17345594 | 26..221 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:10 Download gff for
FMO03591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13152993..13153088 | 573..668 | 100 | <- | Minus |
| arm_3R | 13156740..13156875 | 437..572 | 100 | <- | Minus |
| arm_3R | 13158217..13158431 | 222..436 | 100 | <- | Minus |
| arm_3R | 13171121..13171316 | 26..221 | 97 | | Minus |
