FMO03592.5prime Sequence
743 bp (743 high quality bases) assembled on 2008-07-14
> FMO03592.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGAGGAAGTG
GTGGAGTCCAGCAGCCAGGAGGCGAGCCAGGTTATACCGCAGGAGCAGGA
GGACTGGGCTGACGATGTCGTTACCACAATGCCGGCCCAGGAGGTCACCG
AGTGGCCGGAAATCAAGCTTTTCGGGCGCTGGGCCTGCGACGACATCTCC
ATCAGCGACATCTCGCTGCAGGACTACATTGCCGTAAAGGAGAAGTTCGC
CCGCTACCTGCCGCACTCCGCCGGACGCTATGCGGCCAAGAGATTCCGCA
AGGCCCAATGCCCCATCGTGGAGCGCCTCACCAGCGGGCTGATGATGAAG
GGGCGCAGCAACGGCAAGAAGCTCCTCGCCTGCCGCATCGTCAAGCACGC
CTTCGAGATCATCCATCTGCTAACCTCGGAGAATCCGCTTCAGGTCACCG
TCAACGCCATCGTCAATTCCGGTCCGCGCGAGGACTCCACGCGAATCGGA
CGCGCCGGCACTGTGCGCCGCCAGGCAGTCGATGTGTCGCCCTTGCGTCG
TGTCAACCAGGCAATTTGGCTAATCTGCACTGGAGCACGTGAGGCTGCCT
TCCGCAACATCAAGACGGTGGCCGAGTGTCTGGCTGATGAGCTGATCAAC
GCCGCCAAGGGATCCTCCAACTCCTACGCCATCAAGAAGAAGGACGAGTT
GGAGCGCGTGGCCAAGTCGAATCGTGCAAGCTTTCTAGACCAT
FMO03592.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS5b-RA | 874 | CG7014-RA | 83..776 | 32..725 | 3455 | 99.9 | Plus |
| RpS5b-RB | 951 | CG7014-RB | 83..612 | 32..561 | 2635 | 99.8 | Plus |
| RpS5a-RD | 809 | CG8922-RD | 121..691 | 155..725 | 1475 | 83.9 | Plus |
| RpS5b-RB | 951 | CG7014-RB | 687..853 | 559..725 | 835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14900948..14901481 | 565..32 | 2640 | 99.6 | Minus |
| 3R | 32079331 | 3R | 14900530..14900697 | 725..558 | 840 | 100 | Minus |
| X | 23542271 | X | 17146796..17147086 | 445..155 | 720 | 83.2 | Minus |
| X | 23542271 | X | 17144617..17144718 | 660..559 | 300 | 86.3 | Minus |
| X | 23542271 | X | 17145015..17145126 | 561..450 | 290 | 83.9 | Minus |
| X | 23542271 | X | 17143706..17143773 | 725..658 | 235 | 89.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:28 has no hits.
FMO03592.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:16:09 Download gff for
FMO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS5b-RA | 104..807 | 27..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:16 Download gff for
FMO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS5b-RA | 104..807 | 27..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:47 Download gff for
FMO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS5b-RA | 79..782 | 27..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:47 Download gff for
FMO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14900524..14900694 | 561..732 | 98 | <- | Minus |
| 3R | 14900953..14901485 | 27..560 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:16 Download gff for
FMO03592.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10726246..10726416 | 561..732 | 98 | <- | Minus |
| arm_3R | 10726675..10727207 | 27..560 | 99 | | Minus |
