FMO03593.5prime Sequence
746 bp (508 high quality bases) assembled on 2008-07-14
> FMO03593.5prime
CTTCGTATAGCATACATTATACAAAGTTATCAGTCGACATGACGAACATG
CGGCCGCCGCAGAAGTCCAAGCTGCTGAAGGTCGTCATACTGGGCGACGG
AGGCGTTGGCAAGTCCGCCCTGCTCACCCGATTCGCCGCCAGTCGCTACG
AGGAGAACAACTTCCACACCATCGGCGTGGAGTTCATGAACAAGGACATA
GTCGTCGACGGGGAGCGCTACACTCTGCAGATATGGGACACCGCTGGCCA
GGAGCGATTCCGGGCTCTACGCACCCCGTTCTACTGAGGATCGGACATCT
GTCTGCTCTGCTACGCACTCGACGACCGGGACAGCTTGAAGGGATTGGGT
GTGTGGCGCAATGAGTTCCTCAACTACGCAGATGTGGACCAGGACAAGTT
TCCATTCATCGTGGTGGGAAATAAGAACGACATTCCGGCGCAGAAGCGAC
AGGTGAGCTCCGACGCAGTGCAGCAGTGGTGCGCGGAGCAGAAGGTGGTC
TGCCACATCGAGACGTCATCAAAGGCGGCAACCAATGTGACGGATGCGTT
CGTCCTTGGCCTTCGCCAGTGGCGGCACATGGAGTGCGTGGCCGAGGCGG
ATCTGCGCCAGCACGGCGACACCATTGACCTCACCCGCCCCCATTCGCCT
GTGCATCGGCGCATCTGTTTGCACAGGCCGAGGATGTTTTGTCGGCGGCT
TATGTCATGAACGCGGATGGTGATGATGCCTGCCATGCCAGTCCGG
FMO03593.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab9-RA | 1604 | CG9994-RA | 299..1004 | 39..746 | 3115 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19434921..19435225 | 424..730 | 1100 | 93.5 | Plus |
| 2L | 23513712 | 2L | 19434665..19434861 | 229..425 | 970 | 99.5 | Plus |
| 2L | 23513712 | 2L | 19432872..19433063 | 39..230 | 930 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:12:35 has no hits.
FMO03593.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:52 Download gff for
FMO03593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9-RA | 272..985 | 31..746 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:51 Download gff for
FMO03593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9-RA | 291..1004 | 31..746 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:04 Download gff for
FMO03593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab9-RA | 291..1004 | 31..746 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:04 Download gff for
FMO03593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19432864..19433063 | 31..230 | 97 | -> | Plus |
| 2L | 19434667..19434861 | 231..425 | 99 | -> | Plus |
| 2L | 19434923..19435241 | 426..746 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:51 Download gff for
FMO03593.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19432864..19433063 | 31..230 | 97 | -> | Plus |
| arm_2L | 19434667..19434861 | 231..425 | 99 | -> | Plus |
| arm_2L | 19434923..19435241 | 426..746 | 93 | | Plus |
