FMO03594.5prime Sequence
501 bp (501 high quality bases) assembled on 2008-07-14
> FMO03594.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAATATCAA
GCGGAAGAAGACCAGGAAGCTGCGTGGTCATGTGAGCCACGGTCACGGCC
GTATCGGCAAGCACCGCAAGCATCCCGGAGGTCGCGGTAACGCTGGTGGC
ATGCACCATCACCGCATCAACTTCGACAAATACCATCCTGGTTACTTCGG
CAAGGTGGGCATGAGGAACTTCCATCTGCGTCGCCAGCACAAGTTCAGGC
CCGAGATCAACCTGGACAAGCTCTGGTCCCTGGTCGGAGCCGAGAAGTTC
GCCGAGCTGGAGAAGGAGAAGAGCACCAAGGCTCCCGTCATCGACTTGGT
TAAATTCGGCTACTACAAGCTGCTGGGCCGTGGTCACCTGCCCGCCCGCC
CCGTCATCGTGAAGGCCAAGTACTTCTCTAAGAAGGCTGAGGACAAGATC
AAGAAGGCCGGCGGTGTGTGCTTGCTGAGCGCCGCAAGCTTTCTAGACCA
T
FMO03594.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL27A-RD | 613 | CG15442-RD | 54..500 | 37..483 | 2235 | 100 | Plus |
| RpL27A-RA | 586 | CG15442-RA | 27..473 | 37..483 | 2235 | 100 | Plus |
| RpL27A-RC | 633 | CG15442-RC | 74..520 | 37..483 | 2235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4457739..4458058 | 358..39 | 1600 | 100 | Minus |
| 2L | 23513712 | 2L | 4457384..4457509 | 483..358 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:21 has no hits.
FMO03594.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:15:49 Download gff for
FMO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL27A-RA | 74..526 | 37..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:56 Download gff for
FMO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL27A-RC | 74..526 | 37..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:51:22 Download gff for
FMO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL27A-RC | 74..526 | 37..491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:51:22 Download gff for
FMO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4457378..4457509 | 358..491 | 97 | <- | Minus |
| 2L | 4457740..4458067 | 28..357 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:56 Download gff for
FMO03594.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4457378..4457509 | 358..491 | 97 | <- | Minus |
| arm_2L | 4457740..4458067 | 28..357 | 98 | | Minus |
