Clone FMO03595 Report

Search the DGRC for FMO03595

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:35
Well:95
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03595.5prime Sequence

753 bp (753 high quality bases) assembled on 2008-07-14

> FMO03595.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCAGTTAAATAC
CCTGCGGCTTGCCTTGATTTTCCTAAGTTTTGTTCGCCTGGAGGCGCAGG
CTAATGTTCAGAATAATGGCTGGCAGAAGGTGTTGCCTGATGACTTCAGA
CGAGAACGTGATAAAAGTTCAACCAGAACGCGCCGGAATCCGCAGGAGGA
ATTGCGCCTGAGACACGAGCAGCATCATTTGCGCCTGCAGCAACATCAGA
TGGCGTGGGAGCTGGACTTGCAGCGGCAGCTGCAGCAGCATCTGCAGGAG
CAGCAGTCGGAGCAGTCGGAGCAGCAGAGCCGGCCGGTGCGTCATCATCA
GCATAAATCTCACACCAAGGAACTGGCCAAGAAGCCCATTAGACGGGCAC
CGAGTTTCGGCGATGACAAGGCCAAGATGGTGCAGAAGCGCAGACTACAC
TACAACGAGTACGATAACGAAGATCTCGAGCTGCACACCATCGAAACCGG
CGATCAGGGGACCTTCACCCCGCGGCAGTGGCAGCAAATCGAGATTGCCC
ATCGGCGGCAGAAGGAGCAACATCAATTGCAGTTGCTGGCGCAACGACAA
CAGCAGCGACAACTGCTGACAACGACAACGGCAACGGCAACGGCAATGGC
AATGGCAACAACGTCGAAAGCAACGGAACCCAATGATGCCAAATCGGAGG
ATAATGATGTGAGTGAATCCAAGGGGGATTCGATTGCAAGCTTTCTAGAC
CAT

FMO03595.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf3-RA 3486 CG34378-RA 133..811 37..715 3380 99.9 Plus
Pvf3-RE 2485 CG34378-RE 675..1347 37..709 3365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7132697..7133395 735..37 3495 100 Minus
Blast to na_te.dros performed 2014-11-28 19:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2757..2870 562..676 221 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2421 557..674 219 67.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2400..2883 193..674 215 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6854 559..680 211 64.8 Plus
roo 9092 roo DM_ROO 9092bp 1076..1171 550..646 203 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6878 526..680 195 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2255..2420 200..368 189 59.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6827 566..674 182 64.2 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7141..7226 590..674 157 66.3 Plus
TART-C 11124 TART-C TARTC 11124bp 8594..8679 590..674 157 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6917 550..674 155 60.6 Plus

FMO03595.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:01 Download gff for FMO03595.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RB 289..990 37..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:35 Download gff for FMO03595.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RA 133..817 37..722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:57 Download gff for FMO03595.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvf3-RA 133..817 37..722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:57 Download gff for FMO03595.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7132694..7133395 37..739 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:35 Download gff for FMO03595.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7132694..7133395 37..739 99   Minus