FMO03596.5prime Sequence
581 bp (581 high quality bases) assembled on 2008-07-14
> FMO03596.5prime
TCGTATAGCATAATAATACAAAGTTATCAGTCGACATGACTTTGGTGGGC
CTAGCTGCCCGCAAATTAGCGCAAAAGAAGAGATCCGCAAAGCAAGCAGC
AGACTTTCCCAATGGCATCCGGTGCCAGAAGTGCCTGCAGATCGGACACT
GGAGCTATGAGTGCAAGGAGAAGCGCAAATACGTCCACCGGAGCTCGCGT
ACCAAGCAGCTAAGCAAGCGTATGTCCCAAAAGGAGGCTGACGCACCCAA
GAACCAGGTGGAGGAGCACTCGGAAGTGGCTTCCTCGGAAGGAAAGAAGG
TCCGTCGAAAGCGGAAAACGAGCAAGAGCTCCTCGTCCTCCTCCAGCTCG
TCGGACAGCTCAGACAGCAGCAGCGAATCGGGCTCCTCATCCGAATCAGA
CTCGAGCAGCTCCAGTTCGGATTCGGACGACGAGGAAGGCAGCTCGTCAG
ACTCCAGTGGAAGTGGCTCGGACAGCGACAGCAGCGAGGATCAAAAGCAG
GGAGCTCCACAAAAAAAGAAAAAACGAGCCGGGAGTTCACCTGAATCTTC
TGACGATCAAGAGGCAAGCTTTCTAGACCAT
FMO03596.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5516-RB | 733 | CG5516-RB | 90..617 | 36..563 | 2640 | 100 | Plus |
| CG5516-RA | 811 | CG5516-RA | 168..695 | 36..563 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15964163..15964645 | 81..563 | 2415 | 100 | Plus |
| 3R | 32079331 | 3R | 15964051..15964097 | 36..82 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:45:47 has no hits.
FMO03596.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-07-14 18:17:03 Download gff for
FMO03596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5516-RA | 159..694 | 27..567 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:40 Download gff for
FMO03596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5516-RA | 165..700 | 27..567 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:17:31 Download gff for
FMO03596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5516-RA | 163..698 | 27..567 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:17:31 Download gff for
FMO03596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15964165..15964648 | 83..567 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:40 Download gff for
FMO03596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11789887..11790370 | 83..567 | 99 | | Plus |
