FMO03606.5prime Sequence
875 bp (875 high quality bases) assembled on 2008-08-11
> FMO03606.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGTTTCACAAGTGTGAA
CAGGCCTTAAACATTGTGTTTTTCTGGCATTCTAGTCGGCTTTATTTGAG
CTGTTTCACAAACGAAAGATATGGCTTTCTTGTAATCGTGAACCGTAAAC
TTGTGTGTTGCGCTAGGAATAGGGTGGGCTGTGTAGAGCTCTTCATGTTT
ATATATATTATAACAAAAATAGGAGCATCCGACAAATCAACCCTCACTCG
TATAGTCTATGCGACGTATATCAAGAACTTATACCAACATCTGAAATTAC
CCAATCGATTAATGGAGCAAAACTCAACTGCGGCTGGCAACGCCAACCCT
GCTACAGTTCCTGCCAAAAGGGGTACGCAACAAGGTCGCAAGAAGTCTGG
CCCCAAGTTCGAACTGTCTGAGGCCCAAAAATGCGACATTAAGGAGGCCT
TTGATCTATTTGACAACGAAGGCACGGGTTACATTGAGGTAAAGGAACTT
AAGGTGGCCATTAGGGCTCTGGGATTCGAGCCAAAAAAGGAGGAGATTAA
GAGGATGATTTCCGACATTGACAAGGACTGCAGTGGGCGCATTGCGTTTA
ACGTCTTTCTGCAACTGATGACTATAAAGATGGCCGAAAAGGACACTAAG
GAAGAGATTCTTAAGGCTTTTCGGCTTTTTGATGATGATGACACTGGAAA
AATTTCATTCAGAAATCTAAAGAGGGTGGCTCGTGAACTTGGTGAAACAC
TTACTGACGAGGAACTGCGAGAGATGATAGACGAAGCCGATTTGGACAAT
GACGGGGAGGTAAATCAAGAAGAATTTCTGCGAATCATGAAGAAGACTAG
TTTGTATGCAAGCTTTCTAGACCAT
FMO03606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17493-RB | 1663 | CG17493-RB | 158..982 | 33..857 | 4125 | 100 | Plus |
| CG17493-RD | 5997 | CG17493-RD | 1..806 | 52..857 | 4030 | 100 | Plus |
| CG17493-RC | 1364 | CG17493-RC | 1..806 | 52..857 | 4030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22550548..22551104 | 301..857 | 2785 | 100 | Plus |
| 2L | 23513712 | 2L | 22550221..22550488 | 33..300 | 1340 | 100 | Plus |
| 2L | 23513712 | 2L | 18208799..18209013 | 649..435 | 190 | 72.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:40 has no hits.
FMO03606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:19 Download gff for
FMO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17493-RB | 152..987 | 27..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:19 Download gff for
FMO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17493-RA | 102..937 | 27..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:31 Download gff for
FMO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17493-RB | 152..987 | 27..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:31 Download gff for
FMO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22550215..22550488 | 27..300 | 98 | -> | Plus |
| 2L | 22550548..22551109 | 301..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:19 Download gff for
FMO03606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22442947..22443220 | 27..300 | 98 | -> | Plus |
| arm_2L | 22443280..22443841 | 301..862 | 99 | | Plus |
