FMO03607.5prime Sequence
644 bp (644 high quality bases) assembled on 2008-08-11
> FMO03607.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACTCCACTCAA
AGCCCGGTTTATCGCACCTCCGTGGAGCAAAAGCGGCATGCTCAAGAAGT
GGCCAAAAGACAGCGGATGGGCAACCAAATGCCAAGACTTCGCGAAATGC
TGCGAGAGAAATACCGCAAGCGCATCATAGAAACGCGCAATAGATGCACG
GATGCCCAACGAGAAATCCAATTGTCCGAACTCAGGGAAATCCTGCGCCT
GGAACTCAGTGAGCTAGAGAAGGATGTGGAGCTTGAGGAGCTGATTCTGG
AGGAGCTACTATCCGATGTCAACGAGTGGTATGCCCTGGGCGAAAAGAAT
CTGGAAACGCTATACGCAGAGCCCGATGAGCAGCAAAAGGAGGTTTTATG
CCCAGTTTGTCAGATTAAAAACCTACGCCATCACAAAGGTGCCTTCATCT
GCGAGTGTGGCATCCGCTTCGAGCACTCTGCGAACATGGAACAGCTGCAG
ATACTGCTGCAACAACAAATCGCCAGCCATGAACTTCAGTGCACTCAGGC
CCTGCGATTTTTCATCGAACCCGCTTCGGGACAACTATACGACATGTGCG
GCAGCTGCGACTACTTCTCCTCCGTCGCAAGCTTTCTAGACCAT
FMO03607.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ripalpha-RA | 1259 | CG18145-RA | 231..825 | 32..626 | 2960 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10199835..10200237 | 626..224 | 2015 | 100 | Minus |
| 2L | 23513712 | 2L | 10200416..10200542 | 158..32 | 620 | 99.2 | Minus |
| 2L | 23513712 | 2L | 10200291..10200358 | 224..157 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:21 has no hits.
FMO03607.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:01 Download gff for
FMO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ripalpha-RA | 225..825 | 26..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:28 Download gff for
FMO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ripalpha-RA | 223..823 | 26..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:55 Download gff for
FMO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ripalpha-RA | 225..825 | 26..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:55 Download gff for
FMO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10199835..10200236 | 225..626 | 100 | <- | Minus |
| 2L | 10200291..10200356 | 159..224 | 100 | <- | Minus |
| 2L | 10200416..10200544 | 30..158 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:01 Download gff for
FMO03607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10200416..10200544 | 30..158 | 97 | <- | Minus |
| arm_2L | 10199835..10200236 | 225..626 | 100 | <- | Minus |
| arm_2L | 10200291..10200356 | 159..224 | 100 | <- | Minus |
