FMO03609.5prime Sequence
591 bp (591 high quality bases) assembled on 2008-08-11
> FMO03609.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGGACTTCAATAGCCTAGC
CTACGATCAGAAGTTCTTCAATTTCACAGCGGCACAGTTGTCTGCAGAGC
GCGAACATATTGTGCAGGACATAATTAAGAAGGGTATTGGTCAGATCATC
GACAAGATCAAGACACCCGCCACAGCGGAATTGCTGGAAGCCGAGAAGGA
GACCGTTGAGCGTCGTTTCCAGGCATCCGCCTCCAAGGGCCTAAAAGCCC
TCAGGGAACTGGACAGCAAAGTGTTCCACGTTCCACCGCATGTGCTGCAT
CCGGAGCACATGTTCGTCGAGAATCAGTATACCAGCGAAGAGGAGGAGCA
GAAGACAGCCAGGTTGGAGGAGCTGAAGGCCAAATACAGAGAGAACATGG
CCATGCTGGCGCATTTGAAGATCGAGGAGGAGAAGTACGCCGCCATGGAG
GATCTCATCCAGAAGGAGATCGAAATGCAGGATCGCGTGCAGCGAAGCTG
CTCCTCCCTCAACATCACCAAGCTGAAGCAATTCTGGAATCAAGTGCCCC
TGCAGATAAAGAAGGAGACTGATGCAAGCTTTCTAGACCAT
FMO03609.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mis12-RA | 839 | CG18156-RA | 115..657 | 31..573 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6968509..6968801 | 393..101 | 1465 | 100 | Minus |
| 3L | 28110227 | 3L | 6968217..6968398 | 573..392 | 910 | 100 | Minus |
| 3L | 28110227 | 3L | 6968864..6968934 | 101..31 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:35:15 has no hits.
FMO03609.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:15 Download gff for
FMO03609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mis12-RA | 110..660 | 22..577 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:22 Download gff for
FMO03609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mis12-RA | 104..654 | 22..577 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:04 Download gff for
FMO03609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mis12-RA | 110..660 | 22..577 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:04 Download gff for
FMO03609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6968213..6968396 | 394..577 | 98 | <- | Minus |
| 3L | 6968509..6968801 | 101..393 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:15 Download gff for
FMO03609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6961313..6961496 | 394..577 | 98 | <- | Minus |
| arm_3L | 6961609..6961901 | 101..393 | 100 | <- | Minus |
