Clone FMO03612 Report

Search the DGRC for FMO03612

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:36
Well:12
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31675-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03612.5prime Sequence

497 bp (497 high quality bases) assembled on 2008-08-11

> FMO03612.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCAGCATTATTTA
CTTTTGTTTGGCGCGCTCATCTCGCTACTGGCCTCAGCTTACGCCATCAA
GTGCTATGCCTGCGAATCCGTCTACGAGGCTAGTTGCGGCGACGACTTCG
AAGTCGAGAACCATTTTAAATACGACTGCGCCTTCATTGCTCCTCCGCGA
TTCCTGGAGAACGATCTGCTCAGCGTGAATGCCACGGCCTGTTTGAAACG
GGTATTCAAGGAAAACGGCGTGCGTAAGATCGTCAGAGGCTGCTACTTCG
GCGAGGTAAATGCCACCGATGTGTGGTGCAAAATGGACCCCACCCTGTCG
GCGGTGCAGAACTCAAGTTGTCATGTGTGCGACAGCGAGAACTACTGCAA
CGGATCGGAAAATCATCCAGTGGATAAATGGAAAATCTTCGGCAGTCTGG
TCTTGTTTCTCTTGGCAACTCAACTACTCGCAAGCTTTCTAGACCAT

FMO03612.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31675-RA 1151 CG31675-RA 392..835 36..479 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20869116..20869334 261..479 1095 100 Plus
2L 23513712 2L 20868349..20868524 86..261 880 100 Plus
2L 23513712 2L 20868146..20868197 36..87 260 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:51:05 has no hits.

FMO03612.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:34 Download gff for FMO03612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 384..841 28..485 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:17 Download gff for FMO03612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 382..839 28..485 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:57 Download gff for FMO03612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31675-RA 384..841 28..485 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:57 Download gff for FMO03612.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20869117..20869340 262..485 98   Plus
2L 20868138..20868197 28..87 95 -> Plus
2L 20868351..20868524 88..261 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:34 Download gff for FMO03612.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20869117..20869340 262..485 98   Plus
arm_2L 20868138..20868197 28..87 95 -> Plus
arm_2L 20868351..20868524 88..261 100 -> Plus