FMO03613.5prime Sequence
973 bp (812 high quality bases) assembled on 2008-08-11
> FMO03613.5prime
CTTATACGAAGTTATCAGTCGACATGACTCAATATAGCCACGTTAAGTAT
ACACAATCGCCGACGCCGTCGGTGGTTTCCGGCTACTCGAGTGCCTCGCG
TCTCCATTCGCCATTACCGCCACCCGCCAACCACCGGAGGGACTGCCTCT
CGGCGACCACCAAGAGCTACAAATACCTGCGACGTCTGCTCAAGTTCAAT
CAAATGGACTTCGAGTTTGCCCTGTGGCAGATGCTCTACCTCTTTGTGGC
GCCCCAAAAGGTGTACCGGAACTTCAACTACCGGAAACAGACCAAGTCAC
AGTTCGCCCGCGACGATCCGGCCTTTCTGGTCCTCCTGGTCGTCTGCCTA
TGTGTCACCTCCCTGGGCTTTGCGTATGTGCTGGGACTGTCTTTCTGGCA
GAGCATCTCGTTCATATTCTATGTGGTATTCGTGGACTGTATTTTCGTGG
GCATCATAATAGCCTCGTTCTTCTGGGCGGTGACGAATCGGTATCTGCGC
ACAAATAGCCTGGAGCCGGATATCGAGTGGGGCTATGCCTTCGATGTCCA
TCTAAATGCCTTCTTTCCGCCACTGATGCTGCTGCACTTCATCCAGCTGT
TCTTCTACAACTGGCTGATCAGCCAAACGTGGTTCATCTCGCGATTTCTG
GGCAACACCTTTTGGGTTGATGGGCATGGGCTATTATGTGTACATCACAT
TTCTGGGATACAATTGCATTCCCCCATCTGAAAAAACACCCGCATCATTC
TCATCGCCCCTGCCCCATCATCTTTTCCTACTGTTTCTGGGTCGTCACAA
ATTATTGGTTTGAACGCAACGAATATTCCTTTGTCAATTTCTACAAGTAA
TCGGGAATATGCAAGCTTTCTAAACCATTCTTTTGGGGCGCGGGCTCAGT
AAGTGGGCCTAATTCTAATCATAATCCTTAACACAATTCCCACAGGCCTA
GGAAATGCTGGTATGAATAGATG
FMO03613.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9773-RA | 1021 | CG9773-RA | 96..910 | 24..849 | 3850 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8675572..8675933 | 716..354 | 1765 | 99.7 | Minus |
| 3R | 32079331 | 3R | 8676188..8676518 | 354..24 | 1655 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:39:00 has no hits.
FMO03613.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:38 Download gff for
FMO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 96..920 | 24..860 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:39 Download gff for
FMO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 71..895 | 24..860 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:18 Download gff for
FMO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9773-RA | 96..920 | 24..860 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:18 Download gff for
FMO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8675394..8675517 | 716..849 | 91 | <- | Minus |
| 3R | 8675573..8675932 | 355..715 | 99 | <- | Minus |
| 3R | 8676188..8676518 | 24..354 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:38 Download gff for
FMO03613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4501116..4501239 | 716..849 | 91 | <- | Minus |
| arm_3R | 4501295..4501654 | 355..715 | 99 | <- | Minus |
| arm_3R | 4501910..4502240 | 24..354 | 100 | | Minus |
