FMO03614.5prime Sequence
1217 bp (966 high quality bases) assembled on 2008-08-11
> FMO03614.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCAAGTTGCTA
CTTTGCTGCCTTCTACTAACCATCGACAGTGGATGGGCCTTTAATCATGG
CCAGGATCTAGTGGACTTTCAAACTTACGAGGACAATTTCAACAAGACCT
ATGCCTCAACTTCGGCTCGCAACTTCGCCAACTACTACTTCATCTACAAC
CGCAACCAGGTGGCGCATCACAATGCCCAGGCCGATAGGAATCGCACCAC
CTACCGCGAGGCAGTGAATCAGTTCTCGGACATCCGGCTCATCCAGTTCG
CAGCCCTGCTGCCCAAAGCCGTGAATACGGTGACCTCGGCGGCCAGTGAT
CCACCGGCCAGTCAAGCGGCATCTGCCAGCTTTGACATTATCACGGATTT
CGGACTCACCGTGGCGGTGGAGGATCAGGGCGTGAACTGCAGCAGTAGTT
GGGCCTATGCCACCGCCAAGGCCGTGGAGATCATGAATGCCGTGCAGACA
GCCAATCCTCTGCCCTCGTCCTTGTCCGCCCAGCAGCTGCTGGACTGTGC
GGGCATGGGCACCGGATGCAGCACCCAGACGCCCCTGGCTGCCCTCAACT
ATCTCACCCAGCTGACAGATGCGTATCTCTATCCGGAGGTGGACTATCCG
AATAACAATAGCCTGAAAACGCCGGGTATGTGCCAGCCCCCATCCTCTGT
GTCAGTGGGCGTGAAGTTGGCCGGCTATTCCACGGTGGCCGACAACGATG
ATGCCGCCGTAATGCGTTACGTATCGAATGGATTCCCCGTCATAGTCGAG
TACAATCCGGCTACCTTTGGATTCATGCAGTACTCCAGTGGCGTCTATGT
CCAGGAGACGCGTGCCCTGACCAATCAAAGAGCTCACAGTTCCTGGTGGT
CGTGGGCTACGATCACGACGTGGACTCAATCTGGACTACTGGCGCTGCCT
GAACTCATCGGCGACACGTCGGGCGAGGAAGGGTTACATCAGATCGTGCG
CAGTCCAATCAGCCATTGGCATGAATGCCGTTCTTTCCCAGTGCGCTTGC
TGCAAGCTTTTCTAAGACATTCGTTGCCGCGCGGACCAAGTAGTGATCTA
TCATGATCCTAATCTAGTCATACTCAACTAGCTAGGAAATCCTGGTCGGA
ACTGCCTTGCATCCACAAATAAGACTCTGCGGCACGGTACGGTTCTGGAC
CATCATGAATGGAGCCT
FMO03614.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6337-RB | 1402 | CG6337-RB | 30..1053 | 31..1050 | 4840 | 98.6 | Plus |
| CG6337-RA | 1117 | CG6337-RA | 30..1053 | 31..1050 | 4840 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13833924..13834848 | 1050..130 | 4160 | 98.6 | Minus |
| 2R | 25286936 | 2R | 13834966..13835067 | 132..31 | 495 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:12 has no hits.
FMO03614.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:21 Download gff for
FMO03614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6337-RA | 30..1058 | 31..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:03 Download gff for
FMO03614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6337-RA | 22..1050 | 31..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:21 Download gff for
FMO03614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6337-RA | 30..1058 | 31..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:21 Download gff for
FMO03614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13833924..13834846 | 132..1050 | 98 | <- | Minus |
| 2R | 13834967..13835067 | 31..131 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:21 Download gff for
FMO03614.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9721429..9722351 | 132..1050 | 98 | <- | Minus |
| arm_2R | 9722472..9722572 | 31..131 | 99 | | Minus |
