FMO03615.5prime Sequence
1112 bp (1023 high quality bases) assembled on 2008-08-11
> FMO03615.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGCGAAGACA
AGATGAACGGACGCTCCATTCGCATCAACCGGCTGCCGGCCACCATTGTG
GCCATCCTGCTGACCTTTGTCCTGGTCTACTTCCTCAATTTCCATCAGGA
GGAGCGGCCAGCGATCTACGGCATGCTGCGCAGTGAGAATCCCAGCCGCG
TCAATCTACGCAAGATGCTAATAGCCGCCATACAGGCCGCCCAGCGTGGC
GGTCTCGAGGTACTGGACGTGGCCCGGAGTCGCCAGCTGAAGGAGCGCAG
CAAGGGCAAGACGGACGAGGGCGTCAATGATCCCTTCACGGATGCCGACG
GCCGGTCACATTGTGTGATGAAGCAGGGCCTGCAGCGAATCTTTCCCCGC
GTACAAATCTTCTCCGAGGAGGACAAGGAGCACTGCAAGCAGGCACACGG
CTATGATCTAGATCCAACGGTCCTCCACGAGACCGCACAGATACCGGATG
TGACCGTAAATGCCCAGGATGTCACTGTTTGGGTAGATCCGTTGGATGCC
ACCAAGGAGTTCACCGAGGAGCTATACGAGTACGTGACCACCATGGTGTG
CGTGGCAGTGGCCGGAAGGCCCATCATTGGCGTGATCCACAGCCCGTTCA
ATGGACAAACCGCGTGGGCGTGGGTGGGCAACTCGATGTCTGAGTACCTA
TCCAATCTGCATCCGCAGCATTCGCCAAACAATCAGGCGCCCATCATTAC
AGTCTCGCGATCCCACACGGCAGGTGCCAAGGATCTGGCGAGGGGCATCT
TTGGCGAGAATGTCAGCCTGCTGACGGCGGCGGGAGCTGGCTACAAAGTG
CTCCAGGTGGTGGCCAACAATGCCACCGCCTATTTGCACAACGTCGAAGA
TCAAGAAGTGGGACATTTGCGCCAGGCGATGCTATTCTGCACGCATTGGG
CGGCACAATGACCACGCTGACGATCAGTTGATTTACTACGGACCAGAGAT
CGCCAGTCAATACGGAGGGCTGCTGCAACTTGGAGCAGCATGACGAGTAC
ATGGACAGCTGTCATATCGCGAGGCCGCCCAATGCAGCTGGCCGCAGCCT
TTCTAGAAACAT
FMO03615.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15743-RB | 1450 | CG15743-RB | 136..1189 | 38..1084 | 4940 | 98.4 | Plus |
| CG15743-RC | 1959 | CG15743-RC | 645..1698 | 38..1084 | 4940 | 98.4 | Plus |
| CG15743-RA | 1650 | CG15743-RA | 336..1389 | 38..1084 | 4940 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13286351..13286879 | 38..566 | 2645 | 100 | Plus |
| X | 23542271 | X | 13286951..13287450 | 562..1057 | 2120 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:40 has no hits.
FMO03615.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:42 Download gff for
FMO03615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15743-RA | 336..1399 | 38..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:57 Download gff for
FMO03615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15743-RA | 322..1385 | 38..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:46 Download gff for
FMO03615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15743-RA | 336..1399 | 38..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:46 Download gff for
FMO03615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13286351..13286879 | 38..566 | 100 | -> | Plus |
| X | 13286956..13287490 | 567..1092 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:42 Download gff for
FMO03615.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13180384..13180912 | 38..566 | 100 | -> | Plus |
| arm_X | 13180989..13181523 | 567..1092 | 96 | | Plus |
