FMO03616.5prime Sequence
348 bp (348 high quality bases) assembled on 2008-08-11
> FMO03616.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCGAGTTTGGCTAC
CAAGGGATCAGGACTTGTGAACAGGCTCCTCACACAGGCGAGGCCCCAAC
TGGACGTGTTCCTGAAGTACGCCAAGGTGGAACTGACGCCCCCGACGCCC
GCCGATATTCCGGCCATTCGCCAAGGACTGGGCAACATCATCAAGGGAGC
CAAGACCGGCGCCTACAAGAACCTCACGGTTCGCGAGGCCTGGCTTAACA
CCCTGGTGACCGCCGAGGTCATCTTCTGGTTCTACATCGGCGAGTGCATC
GGCAAGCGTCACATTGTAGGCTACAATGTCGCAAGCTTTCTAGACCAT
FMO03616.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)06225-RD | 733 | CG6105-RD | 54..361 | 34..342 | 1490 | 99 | Plus |
| l(2)06225-RB | 477 | CG6105-RB | 54..361 | 34..342 | 1490 | 99 | Plus |
| l(2)06225-RA | 497 | CG6105-RA | 74..381 | 34..342 | 1490 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10975905..10976161 | 330..74 | 1285 | 100 | Minus |
| 2L | 23513712 | 2L | 10976250..10976290 | 74..34 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:37:10 has no hits.
FMO03616.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:06 Download gff for
FMO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06225-RA | 74..381 | 34..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:04 Download gff for
FMO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06225-RC | 434..741 | 34..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:20 Download gff for
FMO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)06225-RA | 74..381 | 34..342 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:20 Download gff for
FMO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10975894..10976161 | 74..342 | 98 | <- | Minus |
| 2L | 10976251..10976290 | 34..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:06 Download gff for
FMO03616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10975894..10976161 | 74..342 | 98 | <- | Minus |
| arm_2L | 10976251..10976290 | 34..73 | 100 | | Minus |
