FMO03617.5prime Sequence
497 bp (497 high quality bases) assembled on 2008-08-11
> FMO03617.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCTGATGTGAAG
TTCTTTGCCGTGCTGCCCACCAATGCCAGTACCTCGGATCGAGTAACCCG
GCTGTCCATCAGCGGCAACCTGCTCCAGGATCCCCAGCAATTCTCGGTGA
ACTTTGTCAACAGTCCGGACTGCACGGACAACATCACATACCACTTCAAG
GTGGTGATTCCCACACAGACGATTATCGAGAATTATAAGCGGAACGGCGA
GTGGAGCAGCCTGCACCAGGAGAAGTACCTGAACATCTTCGACGAGTCCT
CCTTTTGCCTTGAGTTCGCCTTCGACTACGCAAATTCAATGATGCGGGTG
TACCAGGGTAGGGATTCGGGCCACAATTTCATAACCGAGTACGAGACTCT
CTTCTCCCTGTCCGACATCCAGGCTGTACAGGTGTGGGGCGATGTACAGA
AGGTCAACCAGTTTGCCCTAAGCTACAACGCAAGCTTTCTAGACCAT
FMO03617.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14879-RB | 1749 | CG14879-RB | 343..786 | 36..479 | 2220 | 100 | Plus |
| CG14879-RD | 1093 | CG14879-RD | 343..601 | 36..294 | 1295 | 100 | Plus |
| CG14879-RC | 1041 | CG14879-RC | 343..601 | 36..294 | 1295 | 100 | Plus |
| CG14879-RD | 1093 | CG14879-RD | 694..879 | 294..479 | 930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16347096..16347281 | 479..294 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 16347374..16347528 | 294..140 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 16348781..16348884 | 139..36 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:38 has no hits.
FMO03617.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:39 Download gff for
FMO03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 343..786 | 36..479 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:52 Download gff for
FMO03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 341..784 | 36..479 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:45 Download gff for
FMO03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14879-RB | 343..786 | 36..479 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:45 Download gff for
FMO03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16348781..16348884 | 36..139 | 100 | | Minus |
| 3R | 16347096..16347280 | 295..479 | 100 | <- | Minus |
| 3R | 16347374..16347528 | 140..294 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:39 Download gff for
FMO03617.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12172818..12173002 | 295..479 | 100 | <- | Minus |
| arm_3R | 12173096..12173250 | 140..294 | 100 | <- | Minus |
| arm_3R | 12174503..12174606 | 36..139 | 100 | | Minus |
