FMO03620.5prime Sequence
1208 bp (1008 high quality bases) assembled on 2008-08-11
> FMO03620.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTAAAGGCCG
TTATCCTGATCGGCGGTCCCCAGAAGGGCACCCGCTTTCGCCCCCTTTCG
CTTGACACGCCCAAGCCGCTCTTTCCATTGGCCGGTCGTCCTCTAATCGC
CCATCATATTGAGGCCTGCGCCCAGCTGCCCGATATACGCGAGATCCTGA
TCATCGGCTATTATCCGCAGACCCAAATGGAGGGATTCGTGGGCGACATG
CAGGCCCTGTACAGCAGCAGCAACATCAACATCAGGTACCTTCAGGAGTT
CACTGCCTTGGGCACTGCAGGCGGAATGTACCATTTCCGGGATCAGATTA
GAGCTGGTAACCCCCGAGCCTTCTTCGTATTGAACGGAGATGTTTGCGCT
GATTTTCCGCTGCAAGAACTGTGCGACTTTCACGAGAAGCGCCCGGCGAG
TGCTCTGGTTACTATCATGTCCACGGAGGCGACACGTCAGCAATCCTTGC
ACTACGGCTGTCTGGTTTTCGATCGGAGTAGCGGAGCCGTTTCGCATTAT
GTAGAAAAGCCTAGCTCCTATGTGTCCACATTTATCAACTGTGGGGTGTA
TGTCTGTTCCATGGATATATTCACGGTGTTGGCACAGATTTTTCATTCGA
GAGGTCAGGAGTACAGCTGCCAGGCATTTTGCAATGGAAACGGAAATGGA
AATGGACGAGAGCAGGGGCACATCAAGTGGGAACAGGAGGTGCTTACGCC
CCTGGCTGGAACCGATAAACTCTTTGCCATGCCAGTGCCTAACTGGTGGT
CCCAACTGAAGACTGCTGGGTCGGCAATCTACGCAATCGTCATTATCTTG
GCCTGTACAAGAAAACGCATCCCGAGAGATTGGCCAATGTGGGGATCAAG
CGCGGAGAAGGGGACGGCAGCTTGATCTGCACAGTGCATCCCGGACGTCT
ATGTGCATCCCAGTGCCACTGTCCATCACAGCGCAGTGCTGGGACCCATG
TGCCGATTGACTGAGTGACATTGACAGGTGTGCCGCATTCGCGATCGATT
GTTTGGAGCAGCACGATCTGACATACGCCTCGTGCTGCACTCTATTGTGG
CAGGACTCCCCAATTGAGCTGGACCGGTCCAAGCATCTATTGATTCGATC
CATACTGCAATTGGAAGCCACGCTTCACAACGAGGCAGCCCTAAAACCCC
TCGGTATA
FMO03620.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8207-RA | 1562 | CG8207-RA | 129..1204 | 37..1100 | 4930 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15677812..15678516 | 988..284 | 3430 | 99.7 | Minus |
| 2R | 25286936 | 2R | 15678578..15678828 | 287..37 | 1255 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-C | 11124 | TART-C TARTC 11124bp | 9175..9216 | 255..297 | 122 | 79.1 | Plus |
FMO03620.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:50 Download gff for
FMO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8207-RA | 124..1222 | 30..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:53 Download gff for
FMO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8207-RA | 107..1205 | 30..1116 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:43 Download gff for
FMO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8207-RA | 124..1222 | 30..1116 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:43 Download gff for
FMO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15677812..15678514 | 286..988 | 99 | <- | Minus |
| 2R | 15678580..15678831 | 30..285 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:50 Download gff for
FMO03620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11565317..11566019 | 286..988 | 99 | <- | Minus |
| arm_2R | 11566085..11566336 | 30..285 | 98 | | Minus |
