FMO03623.5prime Sequence
602 bp (602 high quality bases) assembled on 2008-08-11
> FMO03623.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGTTGAAAACTATATCG
ATTGGTGTTCTTATCGCCCTCAGTGGGGCCATCATTGCAGAAGGAAAACC
TGTCCTTATTAAGGTTTTCGCTCCCAGCGGTGGCTACTCCAGTGCCAGTT
ACCAAAATACAGTGGGAGCATCGCCTTTCACCAGTCAGCTTATCTCTGGT
CTTATCTCATCAAAAATTCAACTGTTGAACAGCGTGCTACAGACCAAGTC
TTCTTCCGGGGGGTTCCGTATTGGTTTCAATAAGTCTGTCAATTTATTTG
GCCCCACAAGCGCCACGAGCACCACCGAAAGGCCTGTGACACACCATACC
ACCGAGGTAAACACAGACTTTACTCCGGATGAATCTAGTAGGACTACTCA
ACTTTTTTACTCGACAACAACAGAAAGTTTTGTCGAAACGCCGATCCCCA
CAATACATCCCGAGCCACCAGCCACTACCACTTCAGTGATCCCAATAGAG
AGCACCACATCCGTAACACAACCACCCATCTTGACGACACCAAAACCTGG
ATACTCCTATCGCACCCCCATTTCCCCCACCAATGCAAGCTTTCTAGACC
AT
FMO03623.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40198-RB | 669 | CG40198-RB | 28..580 | 32..584 | 2765 | 100 | Plus |
| CG40198-RC | 1567 | CG40198-RC | 28..580 | 32..584 | 2765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4161597..4162049 | 584..132 | 2265 | 100 | Minus |
| 3R | 32079331 | 3R | 4162107..4162208 | 133..32 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:35 has no hits.
FMO03623.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:53 Download gff for
FMO03623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40198-RC | 22..585 | 25..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:37 Download gff for
FMO03623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40198-RA | 267..830 | 25..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:23 Download gff for
FMO03623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40198-RC | 22..585 | 25..592 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:23 Download gff for
FMO03623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4161592..4162048 | 133..592 | 99 | <- | Minus |
| 3R | 4162108..4162211 | 25..132 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:53 Download gff for
FMO03623.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3RHet | 2505358..2505814 | 133..592 | 99 | <- | Minus |
| 3RHet | 2505874..2505977 | 25..132 | 96 | | Minus |
